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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTAGTTTTGAATTCCGCTCCTTGCATTGCAATTCCTGCAATGCTATTCTTGTTTCCTCCAAAATATACACACTCAAGATTTTGGTTTCTTGCCACAGgtaaccgttaacatcttatgtagtaaggttatgttagcagaaactctttctacaaaaaaaagcttgaacgaaaactgttgtttgattggcatcttggtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g10100.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10100.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G004083_T02 (Zea mays), 5'ss of exon 2
TGGGTAGTTTTGAATTCCGCTCCTTGCATTGCAATTCCTGCAATGCTATTCTTGTTTCCTCCAAAATATACACACTCAAGATTTTGGTTTCTTGCCACAGgtaaccgttaacatcttatgtagtaaggttatgttagcagaaactctttctacaaaaaaaagcttgaacgaaaactgttgtttgattggcatcttggtgcag-
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TGGGTGATTCTGAACTTTGTTCCTTGCATCGCCATTCCTGCAATGCTATTCTTGTTTCCTCCCAAGTATACGCATTCAAGGTTCTGGTTCCTTGCTACAGgtagccgtaactg------acaccaacgcaatc-------aaagtcagttcgc---------ccttagcgaaaacttttatctgactgacatctgggtgccag