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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagtgccccagcacctatagcgtgttccattgttgatgtcagtatatcagataataaaatgagtcctcttgctctgttctcgatgatttcagGGTTCTTGATGATATGCGGTTATGGGTAGTTTTGAATTCCGCTCCTTGCATTGCAATTCCTGCAATGCTATTCTTGTTTCCTCCAAAATATACACACTCA

Basic information

species Oryza sativa
transcript LOC_Os01g10100.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10100.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G004083_T01 (Zea mays), 3'ss of exon 1
---gtaatagtgccccagcacctatagcgtgttcc----attgttgatgtcagtatatcagataataaaatgagtcctcttgctctgttctcgatgatttcagGGTTCTTGATGATATGCGGTTATGGGTAGTTTTGAATTCCGCTCCTTGCATTGCAATTCCTGCAATGCTATTCTTGTTTCCTCCAAAATATACACACTCA
     |||| |   |   | |||  ||| ||||||    |  ||| || |    | |  |  |    ||| |||||||| |  | | | || | | |||  ||||||||||||||||||||  |||||||  || |||| |  | ||||||||| || ||||||||||||||||||||||||||||| || ||||| || |||
gtataaatatttgtcacactccttcagcttgttcctcctacggtttatcttgaaacaaaaattctggaaacgagtcctcatcatttctgctggctaatt--agGGTTCTTGATGATATGCGCCTATGGGTGATTCTGAACTTTGTTCCTTGCATCGCCATTCCTGCAATGCTATTCTTGTTTCCTCCCAAGTATACGCATTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218480187|gb|FG966509.1|FG966509
EST:     TGTTTGCTATCACTCTTATCTCTCATACTGGTGAGCAGCGCATGTGAAAG                         GGTTCTTGATGATATGCGGTTATGGGTAGTTTTGAATTCCGCTCCTTGCAT
genomic: TGTTTGCTATCACTCTTATCTCTCATACTGGTGAGCAGCGCATGTGAAAGgtaatagtgc ... atgatttcagGGTTCTTGATGATATGCGGTTATGGGTAGTTTTGAATTCCGCTCCTTGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagtatatcagataataaaatgagtcctcttgctctgttctcgatgatttcagGGTTCTTGATGATATGCGGTTATGGGTAGTTTTGAATTCCGCTCCTTGCATTGCAATTCCTGCAATGCTATTCTTGTTTCCTCCAAAATATACACACTCA
     tatatcagataataaa  TA-rich tract