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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCGGCCGCCGCCGGAGAGATGGTCGGCGGCGGCGAGTACACGCTCGTCTACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttggacaaaattacacatccgtagctagcttccatcccaaatgaatttctcgtctcatcgatcgatccgctgcag

Basic information

species Oryza sativa
transcript LOC_Os01g09450.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09450.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G104176_T01 (Zea mays), 5'ss of exon 4
ACGCGGCCGCCGCCGGAGAGATGGTCGGCGGCGGCGAGTACACGCTCGTCTACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttggacaaaattaca-catccgtagctagcttccatcccaaatgaatttctcgtctcatcgatcgatccgctgcag------------------------------------------------------------------
| | ||  |  |  |  |     ||   ||||||||| |||||||| || ||||||||||||||||||||| || | || | ||||||||| |||||| ||||||| | |        || |||||    ||  || |||| |        ||      | || | |    |||||  ||                                                                   
AGGAGGAGGAGGGGGAGGGCCCCGTGATCGGCGGCGACTACACGCTGGTGTACGAGGACGACGAGGGCGACAGGGTCCTTGCCGGCGACGTCCCCTGGGAgtaagtggaaaccggcaccagcatcccctcctccctcccattc---gcagcttcgcacacacaacaacacgtccgcgtcaccccggtcactctcatagaattcccgtctcacgtgcccgggtgccgtcccgcccctgtccgccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14980964|gb|BI305642.1|BI305642
EST:     TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCA                         GATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
genomic: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttgga ... tccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
EST: gi|58692320|gb|CK081007.1|CK081007
EST:     TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCA                         GATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
genomic: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttgga ... tccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
EST: gi|58601537|gb|CK012065.1|CK012065
EST:     TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCA                         GATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
genomic: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttgga ... tccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT