1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttggacaaaattacacatccgtagctagcttccatcccaaatgaatttctcgtctcatcgatcgatccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCTGCCGCCGCCGTCG
species | Oryza sativa |
transcript | LOC_Os01g09450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCA GATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCTEST: gi|58692320|gb|CK081007.1|CK081007
genomic: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttgga ... tccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
EST: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCA GATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCTEST: gi|58601537|gb|CK012065.1|CK012065
genomic: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttgga ... tccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
EST: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCA GATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
genomic: TACGAGGACGACGAGGGCGACCGGATGCTCGTCGGCGACGTTCCCTGGCAgtaagttgga ... tccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCT
gtagctagcttccatcccaaatgaatttctcgtctcatcgatcgatccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCTGCCGCCGCCGTCG
aaatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggacaaaattacacatccgtagctagcttccatcccaaatgaatttctcgtctcatcgatcgatccgctgcagGATGTTCATCGCCACCGCGAAGAGGCTGCGCGTGCTCAAGAGCTCCGACCTGCCGCCGCCGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT