1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaattcgcacattttgcgtgtgtaatgctgcgatgagagtgcgattttctgtttgtttgtttgtttatgaattttggatgatgtgtatgatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGGGAGGGCGGAGCTGACGATGTCGGACCACCGGCCGGTGGTGGCGACGTAC
species | Oryza sativa |
transcript | LOC_Os01g08780.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTG GTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGGEST: gi|87040614|gb|CI195236.1|CI195236
genomic: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTGgtacgttcgt ... gatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGG
EST: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTG GTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGGEST: gi|88249550|gb|CI249399.1|CI249399
genomic: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTGgtacgttcgt ... gatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGG
EST: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTG GTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGGEST: gi|87038774|gb|CI193396.1|CI193396
genomic: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTGgtacgttcgt ... gatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGG
EST: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTG GTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGGEST: gi|88236403|gb|CI235605.1|CI235605
genomic: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTGgtacgttcgt ... gatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGG
EST: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTG GTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGG
genomic: GCCAAGTACATCGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTGgtacgttcgt ... gatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGG
attttctgtttgtttgtttgtttatgaattttggatgatgtgtatgatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGGGAGGGCGGAGCTGACGATGTCGGACCACCGGCCGGTGGTGGCGACGTAC
tttgtttatgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaattcgcacattttgcgtgtgtaatgctgcgatgagagtgcgattttctgtttgtttgtttgtttatgaattttggatgatgtgtatgatcgatcagGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGATGAGCTACGGGAGGGCGGAGCTGACGATGTCGGACCACCGGCCGGTGGTGGCGACGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - gcacatt
- - - - - - - -ttgcgtg
- - - - - - - - - - - - - -tgctgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt