1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGGTTGGGTGATCTGAATTATCGCATCGACGTCGCGTACGAGAGAGCACACGAGCTGATTTCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAGgtacacatctgaagaacaagaataattagcatgagagcctcatcgtttgccctatatagaatcgtctgttacaacaaaaagttcaattctaaaacttaat...
species | Oryza sativa |
transcript | LOC_Os01g08780.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACGAGCTGATTTCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAG CTGAAGCGAGAGCTAAGGAAGGGTCGGGCGTTCGACGGGTGGACGGAAGGGEST: gi|87038774|gb|CI193396.1|CI193396
genomic: ACGAGCTGATTTCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAGgtacacatct ... aataaatcagCTGAAGCGAGAGCTAAGGAAGGGTCGGGCGTTCGACGGGTGGACGGAAGGG
EST: ACGAGCTGATTTCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAG CTGAAGCGAGAGCTAAGGAAGGGTCGGGCGTTCGACGGGTGGACGGAAGGGEST: gi|88236403|gb|CI235605.1|CI235605
genomic: ACGAGCTGATTTCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAGgtacacatct ... aataaatcagCTGAAGCGAGAGCTAAGGAAGGGTCGGGCGTTCGACGGGTGGACGGAAGGG
EST: TCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAG CTGAAGCGAGAGCTAAGGAAGGGTCGGGCGTTCGACGGGTGGACGGAAGGG
genomic: TCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAGgtacacatct ... aataaatcagCTGAAGCGAGAGCTAAGGAAGGGTCGGGCGTTCGACGGGTGGACGGAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTTGGGTGATCTGAATTATCGCATCGACGTCGCGTACGAGAGAGCACACGAGCTGATTTCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAGgtacacatctgaagaacaagaataattagcatgagagcctcatcgtttgccctatatagaatcgtctgttacaacaaaaagttcaattctaaaacttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa