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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGgtaataatttcatgtctagtttgccaaatgcatgccatactgttcttttggttgcatgttgtacagaattttcctagtttgaagtgaattgttctgccca...

Basic information

species Oryza sativa
transcript LOC_Os01g08010.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88263965|gb|CI367739.1|CI367739
EST:     TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAG                         GAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
genomic: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGgtaataattt ... tttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
EST: gi|88271212|gb|CI387265.1|CI387265
EST:     TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAG                         GAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
genomic: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGgtaataattt ... tttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
EST: gi|88271197|gb|CI387250.1|CI387250
EST:     TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAG                         GAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
genomic: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGgtaataattt ... tttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG