Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88263965|gb|CI367739.1|CI367739EST: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAG GAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
genomic: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGgtaataattt ... tttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
EST:
gi|88271212|gb|CI387265.1|CI387265EST: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAG GAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
genomic: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGgtaataattt ... tttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
EST:
gi|88271197|gb|CI387250.1|CI387250EST: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAG GAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
genomic: TTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGgtaataattt ... tttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgacactttttctaaaaatatcactgaaccatttctgaatcttaatttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAGTTTGAAGATTGGATCCATCAAACACTGTGTTTGCAAGA
tttttctaaaaatatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatacaaaatcgatgtttgtttgcatgtttttatttcgtcttctcgacactttttctaaaaatatcactgaaccatttctgaatcttaatttcaagcagGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAGTTTGAAGATTGGATCCATCAAACACTGTGTTTGCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA