Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86488906|gb|CI131539.1|CI131539EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
EST:
gi|87015761|gb|CI277719.1|CI277719EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
EST:
gi|89194498|gb|CI116935.1|CI116935EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaacatttgagtgaatttgttgcattgcaatcatgcacgtatatgcatctgttcgctgtatgtatgtgttatcagtgtgctactactacttcttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC