Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86488906|gb|CI131539.1|CI131539EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
EST:
gi|87015761|gb|CI277719.1|CI277719EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
EST:
gi|89194498|gb|CI116935.1|CI116935EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catctgttcgctgtatgtatgtgttatcagtgtgctactactacttcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAA
ctactacttcttcttc CT-rich tract
tatgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtaacatttgagtgaatttgttgcattgcaatcatgcacgtatatgcatctgttcgctgtatgtatgtgttatcagtgtgctactactacttcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA