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gtaaaacatctacgattttttaattgatactatctcatataatctaatttgaaactttgccaaagttggttgtgctactactgaaccatgcttttgctcttctctgttttttttttttctgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG
species | Oryza sativa |
transcript | LOC_Os01g06600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCAEST: gi|29666427|gb|CB662702.1|CB662702
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCA
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCEST: gi|29666426|gb|CB662701.1|CB662701
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCEST: gi|29676104|gb|CB672379.1|CB672379
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCEST: gi|33683998|gb|CF312237.1|CF312237
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
EST: ACGTT-ATTCTA-TA-ACTCCTCCCTTGC-ATGGT-ACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCEST: gi|58666043|gb|CK054729.1|CK054729
genomic: ACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCEST: gi|11863268|gb|AU063379.2|AU063379
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
EST: TGCTCCACGTTCATTCTAGTACACTCCTCCCTTGGCAATGGTCACAATAG CTCTTTGTGGGATCTGAGGTTCCAGAAGCAGAAGTACTTGEST: gi|29666428|gb|CB662703.1|CB662703
genomic: TGCTCCACGTTCATTCTAGTACACTCCTCCCTTG-CAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGG-ATCTGAGGTTC-AGAAGCAGAAGTACTTG
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCEST: gi|29678764|gb|CB675039.1|CB675039
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCEST: gi|33675069|gb|CF303308.1|CF303308
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
EST: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAG CTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
genomic: CTGCTCCACGTTCATTCTAGTACACTCCTCCCTTGCAATGGTCACAATAGgtaaaacatc ... tgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTC
ctactactgaaccatgcttttgctcttctctgttttttttttttctgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG
ccatgcttttgctctt CT-rich tract
ttttttttttttctga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacatctacgattttttaattgatactatctcatataatctaatttgaaactttgccaaagttggttgtgctactactgaaccatgcttttgctcttctctgttttttttttttctgaagaacagCTCTTTGTGGATCTGAGGTTCAGAAGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT