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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGCGCGAGGAGGATGGCGCTAAGGTCGGCCTCCCGGCGCTGGATATCTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaaacaaaattgagttcatccatccctttggtgcgtgttgaattgttgatccatgaatgaagcgagatggggaggatcgatttttcggtcaac...

Basic information

species Oryza sativa
transcript LOC_Os01g06600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g06600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G862219_T02 (Zea mays), 5'ss of exon 2
GATGGGCGCGAGGAGGATGGCGCTAAGGTCGGCCTCCCGGCGCTGGATATCTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa-acaaaattgagttcatccatccctttggtgcgtgttgaattgttgatccatgaatgaagcgagatggggaggatcgatttttcggtcaac-
|||||||  || ||||  ||||| |||| ||| ||||||||| |||| ||||| |||||||| |||||||||||||| || ||||| |||||||| || ||||||      |     ||   ||    ||  |  || |   | |  ||   ||   |  |||| ||| | |||  |   | ||||  |    ||   ||  
GATGGGCAAGACGAGGGCGGCGCCAAGGCCGGGCTCCCGGCGATGGACATCTCCCTCGCGTTCCCGCAGGCCACGCCTGCCTCCATTTTCCCGCCGTCCGgtgagagctttattcttttttttttcctcactcaattcgc-tgcgacgaggagtgagtgaatgactga-gtgaggggatcatgatctttgcgccgtggaatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2312322|gb|C28477.1|C28477
EST:     CTCGCTCGCNTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: gi|29666427|gb|CB662702.1|CB662702
EST:     CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: gi|29666426|gb|CB662701.1|CB662701
EST:     CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: gi|29676104|gb|CB672379.1|CB672379
EST:     CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: gi|58666043|gb|CK054729.1|CK054729
EST:     CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: gi|11863268|gb|AU063379.2|AU063379
EST:     CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: gi|29666428|gb|CB662703.1|CB662703
EST:     CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: gi|33675069|gb|CF303308.1|CF303308
EST:     CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG                         CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA