1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaccttaagccatgttccaaaacataattggcttgtaatacatgcttatctatttgcagagcatcatttcactaacccatttgtttctcttgtaatctagGGGCCTGATCCAAAGGCTGCAAATGAGCTTATTACCATTGATGGCGTGCTAAATGCAATTATAGCGAGCTTGGAAAAGGA
species | Oryza sativa |
transcript | LOC_Os01g06470.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTCTACAGCAAGAACTGCTGCTTGGGCTATGTCAAATCTCATCAAG GGGCCTGATCCAAAGGCTGCAAATGAGCTTATTACCATTGATGGTGTGCTAEST: gi|29681506|gb|CB677781.1|CB677781
genomic: AAGGTTCTACAGCAAGAACTGCTGCTTGGGCTATGTCAAATCTCATCAAGgttgtactga ... tgtaatctagGGGCCTGATCCAAAGGCTGCAAATGAGCTTATTACCATTGATGGCGTGCTA
EST: AAGGTTCTACAGCAAGAACTGCTGCTTGGGCTATGTCAAATCTCATCAAG GGGCCTGATCCAAAGGCTGCAAATGAGCTTATTACCATTGATGGCGTGCTA
genomic: AAGGTTCTACAGCAAGAACTGCTGCTTGGGCTATGTCAAATCTCATCAAGgttgtactga ... tgtaatctagGGGCCTGATCCAAAGGCTGCAAATGAGCTTATTACCATTGATGGCGTGCTA
ttatctatttgcagagcatcatttcactaacccatttgtttctcttgtaatctagGGGCCTGATCCAAAGGCTGCAAATGAGCTTATTACCATTGATGGCGTGCTAAATGCAATTATAGCGAGCTTGGAAAAGGA
cactaac putative branch site (score: 9)
cccatttgtttctctt CT-rich tract
atttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccttaagccatgttccaaaacataattggcttgtaatacatgcttatctatttgcagagcatcatttcactaacccatttgtttctcttgtaatctagGGGCCTGATCCAAAGGCTGCAAATGAGCTTATTACCATTGATGGCGTGCTAAATGCAATTATAGCGAGCTTGGAAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - catgttc
- - - - - - - - - -aaacataa
- - - - - - - - - - - - - - - gcttgta
- - - - - - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - -atttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcatc