1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAATGGAAGAGGGTGATATGGTGGTCGATGAGGAGAAAGCATGTCTTGAGGCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCAgtatggaaccggcatattttttatgtattaatataaacatctgtccgtacattcttaatttaaatattgctgacttgcctctttttttcctaataaaaat...
species | Oryza sativa |
transcript | LOC_Os01g06470.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCA GGGTGAAAGGCGTTCAGAANGAAGAAGATAGAGGCGCTTCGTGATTTGAGAEST: gi|33677367|gb|CF305606.1|CF305606
genomic: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCAgtatggaacc ... ttgctcttagGGG-GAAAGGCGTTCAGAA-GAAGAAGATAGAGGCGCTTCGTGATTTGAGA
EST: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCA GGGGAAAGGCGTTCAGAAGAAGAAGATAGAGGCGCTTCGTGATTTGAGACGEST: gi|29667150|gb|CB663425.1|CB663425
genomic: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCAgtatggaacc ... ttgctcttagGGGGAAAGGCGTTCAGAAGAAGAAGATAGAGGCGCTTCGTGATTTGAGACG
EST: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCA GGGGAAAGGCGTTCAGAAGAAGAAGATAGAGGCGCTTCGTGATTTGAGACGEST: gi|29681506|gb|CB677781.1|CB677781
genomic: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCAgtatggaacc ... ttgctcttagGGGGAAAGGCGTTCAGAAGAAGAAGATAGAGGCGCTTCGTGATTTGAGACG
EST: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCA GGGGAAAGGCGTTCAGAAGAAGAAGATAGAGGCGCTTCGTGATTTGAGACG
genomic: GCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCAgtatggaacc ... ttgctcttagGGGGAAAGGCGTTCAGAAGAAGAAGATAGAGGCGCTTCGTGATTTGAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGGAAGAGGGTGATATGGTGGTCGATGAGGAGAAAGCATGTCTTGAGGCAAAGACTGCTCATGCTGTTGAAGAATTGAAATCTGCTTTGTCAATCCAgtatggaaccggcatattttttatgtattaatataaacatctgtccgtacattcttaatttaaatattgctgacttgcctctttttttcctaataaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa