1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTGACAGAAGGATTTTTCTGGATTCCATCTTTGGGAGGCCCTACAACAATTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTGgtaataaaattgatcacacgttaacatatatcaacaatttcattgctgatctaggaaaatcaggtttatagtgcacttgagcgaatttaacctcattttc...
species | Oryza sativa |
transcript | LOC_Os01g05800.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTG GATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTGEST: gi|29620327|gb|CB625339.1|CB625339
genomic: TTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTGgtaataaaat ... aattgtgcagGATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTG
EST: TTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTG GATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTGEST: gi|58694651|gb|CK083338.1|CK083338
genomic: TTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTGgtaataaaat ... aattgtgcagGATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTG
EST: TTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTG GATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTGEST: gi|38482468|gb|CF966504.1|CF966504
genomic: TTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTGgtaataaaat ... aattgtgcagGATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTG
EST: -TGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTGGTG GATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTG
genomic: TTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTGgtaataaaat ... aattgtgcagGATGGCCATCCTCCATTAGGCTGGCATGACACGATATGTTATCTTGTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGACAGAAGGATTTTTCTGGATTCCATCTTTGGGAGGCCCTACAACAATTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTTTTGTGgtaataaaattgatcacacgttaacatatatcaacaatttcattgctgatctaggaaaatcaggtttatagtgcacttgagcgaatttaacctcattttc
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG