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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAAATTACTCCGGAAAGAAGGGCAAAAGATCAAAGAGGAAGCGCATGGTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtactatgaacacacaaacacctttttataaagaagctcactagcttatttgaattctggagttcatgttttttaagtggcaaaaaagaaaggtttatactctatcttatcatatgtccttgatcaattggtgttaatgtcatgtacatttacaaatacag

Basic information

species Oryza sativa
transcript LOC_Os01g05800.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05800.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 12
--TTCCAAATTACTCCGGAAAGAAGGGCAAAAGATCAAAGAGGAAGCGCATGGTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtactatgaacacacaaacacctttttataaagaagctcactagcttatttgaattctggagttcatgttttttaagtggcaaaaaagaaaggtttatactctatcttatcatatgt--ccttgatcaattggtgttaa-tgtcatgtacatttacaaatacag-------------------------
   ||||| |||||| || ||||||||||||||||| ||||||||||||||||| ||||    || ||||  |   || ||||   ||||| | ||  |||||||||| ||||  || | || | || | || |  | ||| | | | |        ||   || | ||| || || |     |  ||||||| |||    || ||  |  |||    |  ||  |||   | ||||   |||   ||  | |   |    |||    |                          
GCCTCCAAGTTACTCAGGGAAGAAGGGCAAAAGATCCAAGAGGAAGCGCATGGTGCAGTGATCGTCACAG--CTCAATCGGATGCGATTTTCGCCACAACTGgtaagtgctattgaccctcagatac-tgttcacgacgaatcacgccacggacacagagaactagggttgatcttctcccttttacaaaaaaaaaaatgatagacggttccttgctgttcgtttcctcagtaaattaaggttttctgaaacgggtaccctcaacagaaaacatgacaatagtttgccattgcag

upper sequence: LOC_Os01g05800.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM5G839422_T01 (Zea mays), 5'ss of exon 11
--TTCCAAATTACTCCGGAAAGAAGGGCAAAAGATCAAAGAGGAAGCGCATGGTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtactatgaacacacaaacacctttttataaagaagctcactagcttatttgaattctggagttcatgttttttaagtggcaaaaaagaaaggtttatactctatcttatcatatgtccttgatcaattggtgttaatgtcatgtacatttacaaatacag
  ||||||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||   ||  ||| |  | |||||||   ||||||||||  |||||||||| ||||  || | || | || | || |||| ||| |     |             |  | ||| |  || |     | | ||||||      ||  |||| |  |||                                                     
ACTTCCAAACTACTCAGGGAAGAAGGGCAAAAGATCGAAGAGGAAGCGCATGGTGCAGTAATCGTTGCAGCA--TAATTGGATGCGATTTTTGTCACAACTGgtaagttctattgaccctcagatac-tgttcataatgaatcatgtca------caaggaaccagggttgaacttctccgttttgtaaaaaa------ttcttactgttccttt----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89175661|gb|CI042682.1|CI042682
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88533579|gb|CI461154.1|CI461154
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCANTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|4714906|gb|AU056023.1|AU056023
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88502172|gb|CI429678.1|CI429678
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTANTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88525355|gb|CI454345.1|CI454345
EST:     GTTCANTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88994803|gb|CI036384.1|CI036384
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|86853625|gb|CI330476.1|CI330476
EST:     TTCAGTAGGGTTTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAATTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: TTCAGTA-GGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|86905375|gb|CI285338.1|CI285338
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|13896050|gb|AU182386.1|AU182386
EST:     TGACAAAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACCCAATTTT
genomic: TGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|33381936|gb|CF197279.1|CF197279
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88514031|gb|CI441537.1|CI441537
EST:     TTCAGTAGGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: TTCAGTA-GGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|66916771|gb|CX103619.1|CX103619
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88983200|gb|CI020764.1|CI020764
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|4716265|gb|AU057381.1|AU057381
EST:     ACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCNGTACGGTTGTGTAGTTGATCTCGGACCCAATTTT
genomic: ACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88536938|gb|CI464742.1|CI464742
EST:     TTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGGTGATCTCGGACACAATTTT
genomic: TTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|14713818|gb|AU197781.1|AU197781
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGG
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGG
EST: gi|88837819|gb|CI079179.1|CI079179
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88509790|gb|CI437296.1|CI437296
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88530676|gb|CI459090.1|CI459090
EST:     TTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: TTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|4714905|gb|AU056022.1|AU056022
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88516853|gb|CI442509.1|CI442509
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|84117524|gb|CD151291.1|CD151291
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTAC
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTAC
EST: gi|88284718|gb|CI406164.1|CI406164
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|86863949|gb|CI332899.1|CI332899
EST:     TTGGATTTCATTTTTATCATTACTG                         GTTAATTCAATT-GCCAGTACGGGTTGTGTAGTTGATCTCGGACACAATTT
genomic: TTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTAC-GGTTGTGTAGTTGATCTCGGACACAATTT
EST: gi|88536527|gb|CI466286.1|CI466286
EST:     TGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTT
genomic: TGACAGAACCTGATTGGATTTCATTTTTGTCATTACT-Ggtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTT
EST: gi|89173571|gb|CI041464.1|CI041464
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88545703|gb|CI475282.1|CI475282
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|29620328|gb|CB625340.1|CB625340
EST:     GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: GTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88478934|gb|CI416205.1|CI416205
EST:     CATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: CATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|88510769|gb|CI438275.1|CI438275
EST:     CCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: CCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|89182402|gb|CI113771.1|CI113771
EST:     TGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: TGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
EST: gi|86524025|gb|CI164231.1|CI164231
EST:     TGTGACAGAACCTGATTGGATTTCATTTTGGTCAGTACTG                         GTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT
genomic: TGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGgtaagtacta ... acaaatacagGTTAATTCAGTTGGCCAGTACGGTTGTGTAGTTGATCTCGGACACAATTTT