1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aattcaaaatggttattatggcattgcattcatttatgctagcacattattagtaatgctatgccttcaactgaaaatttgaattcctgttttactacagGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTTGGGATATG
species | Oryza sativa |
transcript | LOC_Os01g03110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: C-AAAGA-ATCAGAAAACTACAGAAGGATAA-AAAAGTTCTCCATAACTT GTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTTEST: gi|58676057|gb|CK064744.1|CK064744
genomic: CAAAAGACATCAGAAAACTACAGAAGGATAAGAAAAGTTCTCCATAACTTgtacgtttca ... tttactacagGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTT
EST: CAAAAGACATCAGAAAACTACAGAAGGATAAGAAAAGTTCTCCATAACTT GTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTT
genomic: CAAAAGACATCAGAAAACTACAGAAGGATAAGAAAAGTTCTCCATAACTTgtacgtttca ... tttactacagGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTT
attattagtaatgctatgccttcaactgaaaatttgaattcctgttttactacagGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTTGGGATATG
ttcctgtttt CT-rich tract
tgaaaatttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattcaaaatggttattatggcattgcattcatttatgctagcacattattagtaatgctatgccttcaactgaaaatttgaattcctgttttactacagGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTTGGGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - tgctagc
- - - - - - - - - - - - - - - - - - - - - - - - - - -taatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcctg