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gttagccctccagatctttttcaaagcaaagaatattttgaataattttatttattatcttcctgacatatctcctgtcaccattgcagCCATCAAGAGCATCTCTTTTTTCTGAGCTG
species | Oryza sativa |
transcript | LOC_Os01g03070.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTG CCATCAAGAGCATCTCTTTTTTCTGAGCTGGCTGCCAAAGEST: gi|29673992|gb|CB670267.1|CB670267
genomic: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTGgttagccctc ... accattgcagCCATCAAGAGCATCTCTTTTTTCTGAGCTGGCTGCCAAAG
EST: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTG CCATCAAGAGCATCTCTTTTTTCTGAGCTGEST: gi|33677589|gb|CF305828.1|CF305828
genomic: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTGgttagccctc ... accattgcagCCATCAAGAGCATCTCTTTTTTCTGAGCTG
EST: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTG CCATCAAGAGCATCTCTTTTTTCTGAGCTGEST: gi|33678827|gb|CF307066.1|CF307066
genomic: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTGgttagccctc ... accattgcagCCATCAAGAGCATCTCTTTTTTCTGAGCTG
EST: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTG CCATCAAGAGCATCTCTTTTTTCTGAGCTG
genomic: CTAATCTCGTCAACTTCTCCCTTGACTCCAAGCGTGAGAATAGAGAAGTGgttagccctc ... accattgcagCCATCAAGAGCATCTCTTTTTTCTGAGCTG
attttgaataattttatttattatcttcctgacatatctcctgtcaccattgcagCCATCAAGAGCATCTCTTTTTTCTGAGCTG
tcctgac putative branch site (score: 32)
aataattttatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccctccagatctttttcaaagcaaagaatattttgaataattttatttattatcttcctgacatatctcctgtcaccattgcagCCATCAAGAGCATCTCTTTTTTCTGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA