1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTGGAGAGGGCAAAAAGGCAGGAAGAGGCACCTCTAATTGAGCAAGCTTTTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTGgtttgtttctcacaattccttgattgtcacattacaatagcatatgattacttaagctcacaaaaatcactattaatctcttcttgtag
species | Oryza sativa |
transcript | LOC_Os01g03070.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTG AGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAGEST: gi|29680863|gb|CB677138.1|CB677138
genomic: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTGgtttgtttct ... cttcttgtagAGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAG
EST: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTG AGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAGEST: gi|88321263|gb|CI533013.1|CI533013
genomic: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTGgtttgtttct ... cttcttgtagAGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAG
EST: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTG AGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAGEST: gi|88296584|gb|CI537551.1|CI537551
genomic: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTGgtttgtttct ... cttcttgtagAGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAG
EST: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTG AGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAG
genomic: TTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTGgtttgtttct ... cttcttgtagAGAGAGATTGAGCTCAGCAAGCAACACCATGCAGGTGACCTGCAGGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGAGAGGGCAAAAAGGCAGGAAGAGGCACCTCTAATTGAGCAAGCTTTTCAAAAACGCCTTGAAGTAGAGAAAATCCTTCATGAGCAAGAGCAGCTGgtttgtttctcacaattccttgattgtcacattacaatagcatatgattacttaagctcacaaaaatcactattaatctcttcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG