1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GATCTTACTGCTAAGATCAAAGAAAATGAGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAGgtggcctttttttttttttttacaaatggaaagtacttcatttttgttgcctttccccttattatcttgtacctgactacataatatccctgacag
species | Oryza sativa |
transcript | LOC_Os01g01800.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAG CAAGCACGGATACTCGATGATAAATATATGTTGGAAAAGCGCATTGCTCAAEST: gi|32947856|gb|BP184428.1|BP184428
genomic: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAGgtggcctttt ... tccctgacagCAAGCACGGATACTCGATGATAAATATATGTTGGAAAGGCGCATTGCTCAA
EST: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAG CAAGCACGGATACTCGATGATAAATATATGTTGGAAAGGCGCATTGCTCAAEST: gi|58673928|gb|CK062614.1|CK062614
genomic: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAGgtggcctttt ... tccctgacagCAAGCACGGATACTCGATGATAAATATATGTTGGAAAGGCGCATTGCTCAA
EST: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAG CAAGCACGGATACTCGATGATAAATATATGTTGGAAAGGCGCATTGCTCAAEST: gi|29628865|gb|CB633876.1|CB633876
genomic: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAGgtggcctttt ... tccctgacagCAAGCACGGATACTCGATGATAAATATATGTTGGAAAGGCGCATTGCTCAA
EST: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAG CAAGCACGGATACTCGATGATATATATATGTTGGAGAGGCGCATTGCTCAA
genomic: AGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAGgtggcctttt ... tccctgacagCAAGCACGGATACTCGATGATAAATATATGTTGGAAAGGCGCATTGCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTTACTGCTAAGATCAAAGAAAATGAGGAAGAGATTGCGCAATTAAGAAAACATCTTGCTGACTACTCATTGAAGgtggcctttttttttttttttacaaatggaaagtacttcatttttgttgcctttccccttattatcttgtacctgactacataatatccctgacag
- - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG