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...ttttgttctgcaatcatgtttgtgtttttttgtaaatcattgctgtagacatacaaaaatgtggtatgattgacaacaacttttgttctgtcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT
species | Oryza sativa |
transcript | LOC_Os01g01800.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|88521796|gb|CI448960.1|CI448960
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|86437315|gb|CI119037.1|CI119037
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTCCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|29628866|gb|CB633877.1|CB633877
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|88522029|gb|CI449759.1|CI449759
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|88257917|gb|CI360503.1|CI360503
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: GAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|88560133|gb|CI490766.1|CI490766
genomic: GAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|88530544|gb|CI458948.1|CI458948
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: CTGGTCAGCGTGGTGTTGTTTTCACAGAGAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATEST: gi|32947857|gb|BP184429.1|BP184429
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
EST: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCT ATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
genomic: CTGGTCAGCGTGGTGTTGTTCTCACAGAGAAATTTCAGCAAGCAACTTCTgtacgtcctt ... tcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGAT
tagacatacaaaaatgtggtatgattgacaacaacttttgttctgtcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT
gattgac putative branch site (score: 12)
cttttgttctgtcttt putative PPT
atacaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttctgcaatcatgtttgtgtttttttgtaaatcattgctgtagacatacaaaaatgtggtatgattgacaacaacttttgttctgtcttttccagATTAATATTCCTTACGGGCGTCCGACAGAGTTCTTGATTACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -ttctgca
- - - - - - atcatgt
- - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - -ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - -catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaca