Sequence
atgc intronic sequence ATGC exonic sequenceGATCGTACAGCACGAGGAATTTATGACTTATGCGAGTTCACTAAAAGGCTGGATAAGAGCCCCAAAACTGATACTCGTCAGgcaagttagcacaatgcccaaaagctatttttggcagaccttgctatgttgctagcctgaacttctattcccttacgatcccatactagaacattattga...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g01070.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g01070.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G147587_T01 (Zea mays), 5'ss of exon 10
GATCGTACAGCACGAGGAATTTATGACTTATGCGAGTTCACTAAAAGGCTGGATAAGAGCCCCAAAACTGATACTCGTCAGgcaagttagcaca-atgcccaaaa-gctatttttggcagaccttgctatgttgctagcctgaacttctattcccttacgatcccatactagaacattattga
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GATCGGACAACACGAGGAATATATGATTTGTGTGAATTCACTAAAAGATTGGATCAGAGCCCGAAAGCTGATACTCGTCAGgcaagtcaacacgtatacctaattcactgcttatgaatttattgtgaacactatcatgttaagcctatgacctgtgagaaatttgaacctcggtcctcct--
upper sequence: LOC_Os01g01070.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G078711_T01 (Zea mays), 5'ss of exon 10
GATCGTACAGCACGAGGAATTTATGACTTATGCGAGTTCACTAAAAGGCTGGATAAGAGCCCCAAAACTGATACTCGTCAGgcaagttagcacaatgcccaaaagctatttttggcagaccttgctatgttgctagcctgaacttctattcccttacgatcccatactagaacattattga---
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GATCGGACAACACGAGGAATATATGATTTGTGTGAATTCACTAAAAGATTGGATCAGAGCCCGAAAGCTGAGACTCATCAGgcaagtcaacacg-tgcctgat--tcactgcttatgaatttatgaacattatcatgttaagccagtgagaagtttgaacctggtagccgggtcctcttgtgac
upper sequence: LOC_Os01g01070.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G432653_T01 (Zea mays), 5'ss of exon 5
GATCGTACAGCACGAGGAATTTATGACTTATGCGAGTTCACTAAAAGGCTGGATAAGAGCCCCAAAACTGATACTCGTCAGgcaagttagcacaatgcccaaaagctatttttggcagaccttgctatgttgctagcctgaacttctattcccttacgatcccatactagaacattattga
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GATCGGACAACACGAGGAATATATGATTTGTGTGAATTCACTAAAAGATTGGATCAGAGCCCGAAAGCTGATACTCGTCAGgcaagttaacacatatacctgattcactcttatgaatttattgtgaacacatcatgttaagcctatgacctgtgagaaatttgaacctcggtcctcctgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|287197|gb|D16001.1|D16001EST: GGATAAGAGCCCCAAAACTGATACTCGTCAG GTCTTATCATCAACTCCTCTTCCAGCTATTGAATTGCCAGAGAGAATTACA
genomic: GGATAAGAGCCCCAAAACTGATACTCGTCAGgcaagttagc ... cgatttccagGTCTTATCATCAACTCCTCTTCCAGCTATTGAATTGCCAGAGAGAATTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCGTACAGCACGAGGAATTTATGACTTATGCGAGTTCACTAAAAGGCTGGATAAGAGCCCCAAAACTGATACTCGTCAGgcaagttagcacaatgcccaaaagctatttttggcagaccttgctatgttgctagcctgaacttctattcccttacgatcccatactagaacattattga
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