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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGGAGGTGAGGTCTCGAAACCCTAGCTGCTCCGACGACGATCGTGGCAGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatccactctcgcgatttctgtgcgtctaatctgtatgtatagggtagcttggcccaatcccccctctctctcgttagcctctagctcgattcgctcctgctcctgtttgttgcttcatttactggagtagcttcgattagctttacttgtttggaaattgcag

Basic information

species Oryza sativa
transcript LOC_Os01g01070.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01070.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G078711_T01 (Zea mays), 5'ss of exon 1
---GGTCG-GAGGTGAGGTCTCGAAACCCTAGCTGCTCCGACGACGATCGTGGCAGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatccactctcgcgatttctgtgcgtctaatctgtatgtatagggtagcttggcccaatcccccctctctctcgttagcctctagctcgattcgctcctgctcctgtttgttgcttcatttactggagtagcttcgattagctttacttgtttggaaattgcag
   || ||  |||  | | |   |  |   ||  |   ||  |  |  |    ||     ||  || |||||||| || ||||||| |||||||||||||||||||| |                ||| |  ||||    || |  | |  || |  |  | |||  |||  |  |  | || |         || || ||| | | |||||  |                                                          
CGCGGACGCAAGGCAAAGGCAAAAGGCGGCAGAGGTGGCGCTGCAGTCCAC--CAATTAGCG--GCTATGGTGCTTGGCAAGATCGCCATCGTCATCGGCTCCGgtacg---------------cttccgaacgtcccg-ctctccgcacgggatc-cccgcccccttccttcgcccttatcttcgattcgaggcccgtttctcgcttgctctagcccagc----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33658119|gb|CF280733.1|CF280733
EST:     AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
EST: gi|88421467|gb|CI618591.1|CI618591
EST:     AGCCGCCGTCGGCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCAG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
EST: gi|88315903|gb|CI618779.1|CI618779
EST:     AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
EST: gi|58593533|gb|CF991841.1|CF991841
EST:     AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCG                         GAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG
genomic: AGCCGCCGTCGCCATGGTGCTGGGAAAGATCGTCATCGTCATCGGCTCCGgtagggatcc ... gaaattgcagGAATCGTTGGGACATTACTCACCAGCGGAGAGGCCAAGATTGCGCTCCCCG