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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattctgatatcgattcaaccaattgccatgtcagcaaggtctgcatttctagtcacacttgaacctcttccagCTCGAGAATGATGCCACTGCCCCTGAAGCATCTCAAGTTCTACTCGCATTCACACCCACAGAGGTTGAACATCTTGCGATTGTCAAGGCGACCAGAGCGG

Basic information

species Oryza sativa
transcript 13113.m00157
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: 13113.m00157 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G177273_T01 (Zea mays), 3'ss of exon 2
gtaaattctgatatcgatt--caaccaattgccatgtcagcaaggtctgcatttctagtcacacttgaacctctt----ccagCTCGAGAATGATGCCACTGCCCCTGAAGCATCTCAAGTTCTACTCGCATTCACACCCACAGAGGTTGAACATCTTGCGATTGTCAAGGCGACCAGAGCGG
||||  |||      |||   || ||  ||||    ||  ||   |  |||| ||     ||  || |||| |||    |||| | ||||||| | |||| ||| |||||||||| | |||||| ||||| ||||| ||||||||| || |||||||  | ||||||||||| || |||||||
gtaatgtcttgctcagatgggcatcctgttgcttcctc--cagcataggcatctcccacaacttttcaacccctttgtgccagGTTGAGAATGCTCCCACGGCCTCTGAAGCATCACGAGTTCTCCTCGCCTTCACGCCCACAGAGTTTCAACATCTCTCTATTGTCAAGGCCACAAGAGCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86905478|gb|CI285441.1|CI285441
EST:     CTCACACTAAAG                         CTCGAGAATGATGCCACTGCCCCTGAAGCATCTCAAGTTCTACTCGCATTC
genomic: CTCACACTAAAGgtaaattctg ... cctcttccagCTCGAGAATGATGCCACTGCCCCTGAAGCATCTCAAGTTCTACTCGCATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaattgccatgtcagcaaggtctgcatttctagtcacacttgaacctcttccagCTCGAGAATGATGCCACTGCCCCTGAAGCATCTCAAGTTCTACTCGCATTCACACCCACAGAGGTTGAACATCTTGCGATTGTCAAGGCGACCAGAGCGG
                                             cctcttcc  CT-rich tract
                          atttcta  TA-rich tract