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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgaatgagttccttgtgtttatattgtactgctatttccacactcatttagctccaatatctgttggaacatttctcacaatttgcttatgcatctgatatcatagGTTGCAACTGTACTCCTTTGTTGTGCATTTGTATACGACATCTTTTGGGTATTCATATCTCCAGTGATATTCCAGAAGAGTGTTATGATTACA

Basic information

species Glycine max
transcript GLYMA20G39260.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39260.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G43070.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacctgaatgagttccttgtgtttatattgtactgctatttccacactcatttagctccaatatctgttggaacatttctcacaatttgcttatg-catctgatatcatagGTTGCAACTGTACTCCTTTGTTGTGCATTTGTATACGACATCTTTTGGGTATTCATATCTCCAGTGATATTCCAGAAGAGTGTTATGATTACA
                                     |||||    |   | || |||      |   ||   |   |||||    | |||||||         ||    ||||||| |||||||| ||||| || |||||||| || ||||| || ||||| |||||||||||| ||||||| ||  ||||||||||||||   
------------------------------------gtatttt---atctagtttgctgtgtagtgaattatgattgttctc-tgttatgcttataatggtctgtactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG

upper sequence: GLYMA20G39260.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G05820.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacctgaatgagttccttgtgtttatattgtactgctatttccacactcatttagctccaatatctgttggaacatttctcacaatttgcttatgcatctgatatcatagGTTGCAACTGTACTCCTTTGTTGTGCATTTGTATACGACATCTTTTGGGTATTCATATCTCCAGTGATATTCCAGAAGAGTGTTATGATTACA
                     ||  || || |     ||||| |  ||| |  |   |     |||  || | |  | |   |         |  |  ||| | | | |||||||| ||  | || || |||||||||||| | || ||||||||||||||||||||||| ||| | || ||| || | ||||| |||||| | 
---------------------gtaaattttctgtatgtattttcctactaaaattcttttgtgatccctttgtatgtgttctaa--------tgggtgtctcaca-cttagGTTGCTACCATTCTTCTCTGTTGTGCATTTTTCTATGACATCTTTTGGGTATTCATATCACCACTAATCTTCAAGCAAAGTGTAATGATTGCG

upper sequence: GLYMA20G39260.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0062g01250.t01 (Vitis vinifera), 3'ss of exon 9
gtacctgaatgagttccttgtgtttatattgtactgctatttccacactcatttagctccaatatctgttggaacat-ttctcacaatttgcttatgcatctgatatcatagGTTGCAACTGTACTCCTTTGTTGTGCATTTGTATACGACATCTTTTGGGTATTCATATCTCCAGTGATATTCCAGAAGAGTGTTATGATTACA
 ||  |  | ||       |   | |  || |  |  | |||  |  ||        |   ||| ||  ||  |||   |||  |       || |  ||||  |  || |||||||  ||||||| ||||||||||||||||| || |||||||| ||||| |||||||| ||||| |||||| |  | |||||||||||  ||
atatttataagaagaatgagaaatcac-ttatcttaatgttttgaatct--------tttgataactcatgctacacactcttgcctgacatttgt-tatct--tcacacagGTTGCTTCTGTACTTCTTTGTTGTGCATTTGTTTATGACATCTTCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaatatctgttggaacatttctcacaatttgcttatgcatctgatatcatagGTTGCAACTGTACTCCTTTGTTGTGCATTTGTATACGACATCTTTTGGGTATTCATATCTCCAGTGATATTCCAGAAGAGTGTTATGATTACA
                                              atatcata  TA-rich tract