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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGCTACTCATCCCCGTAGCATTGCCGAGCGGGAGAGAAGAACAAGGATCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctatttctccctccttcttatgtctctctctctctcactctctcactcatgttcttgtctttaattctattgtag

Basic information

species Glycine max
transcript GLYMA20G39220.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937550|gb|BQ081335.1|BQ081335
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|19345968|gb|BM890848.1|BM890848
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGNTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|22933661|gb|BU550800.1|BU550800
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|22928310|gb|BU545449.1|BU545449
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|21887280|gb|BQ740493.1|BQ740493
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|16346863|gb|BI972458.1|BI972458
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|17154048|gb|BM143981.1|BM143981
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|10843837|gb|BF067226.1|BF067226
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGNTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|16346817|gb|BI972412.1|BI972412
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGTGCTACTCATCCCCGTAGCATTGCCGAGCGGGAGAGAAGAACAAGGATCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctatttctccctccttcttatgtctctctctctctcactctctcactcatgttcttgtctttaattctattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA