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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttctatttctccctccttcttatgtctctctctctctcactctctcactcatgttcttgtctttaattctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGTCTTCAAACTCAGGTTCAG

Basic information

species Glycine max
transcript GLYMA20G39220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39220.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G05805.1 (Arabidopsis thaliana), 3'ss of exon 4
gtttttctatttc-----tccctccttcttatgtctctctctctctca-------ctctctcactcatgttcttgtctttaattctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGTCTTCAAACTCAGGTTCAG
|||  | ||| ||     |   |  |   ||||      ||  | | |        ||  |  ||||    |||||   | ||| | ||  |||||||||||||| |||||||||| ||||| || || |||||||| ||||| |||||   |||  |||||
gttactttatatcaaatatatatagtatatatggtaacatcattttgaaaaagtgttcattacctcacacacttgttgctgattttctt--agCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937550|gb|BQ081335.1|BQ081335
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|19345968|gb|BM890848.1|BM890848
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGNTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|22933661|gb|BU550800.1|BU550800
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|22928310|gb|BU545449.1|BU545449
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|21887280|gb|BQ740493.1|BQ740493
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|16346863|gb|BI972458.1|BI972458
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|17154048|gb|BM143981.1|BM143981
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|10843837|gb|BF067226.1|BF067226
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGNTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
EST: gi|16346817|gb|BI972412.1|BI972412
EST:     TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAG                         CAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT
genomic: TCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGgtttttctat ... tctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctctctctctctcactctctcactcatgttcttgtctttaattctattgtagCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGTCTTCAAACTCAGGTTCAG
                                            ttctatt  CT-rich tract
                                       tttaattctattgta  TA-rich tract