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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattttacaatattaatattcttccgtctatcattcacatacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc...

Basic information

species Glycine max
transcript GLYMA20G39100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g23930.1 (Oryza sativa), 5'ss of exon 6
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattt-tacaatattaatattcttccgtctatcattcac-atacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc-
|  |   ||||  |||||||||| || ||| ||||| ||||||| |||||||||||| |  ||||||||||||| |   |   ||  | ||   |||| |   ||  ||||| |   | | |  | || |  |||| ||    | | ||   ||  | ||          | 
GATCGTTATGCACTGGTTTATGACATAAATACAGCAGATGAAACCTGGGAGTGGGTTGACTTTAAAGAGgtaaattcccttttattgtgattgacttctg---atacttcacgacttagtttgctgttggtatggtactaggctgtgttcgtttggtgaggttgggaactca

upper sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g10710.2 (Oryza sativa), 5'ss of exon 7
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgta---aaattttacaatattaatattcttccgtctatcattcaca--tacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc
|  ||  |||| |||| |||||| || ||| |||| |||||| |||||||||||||| |||||||| ||||    ||  |||    | | || |||      |   ||| |      |   ||    || |||        |   |||     ||| || ||  | |       
GATCTGTATGCATTGGCTTATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacctttttcctgtgaacatttgaaaattcttcactttaggttttcattgttttctaggggaacattgcatttaaaaatctattgaattattgg-----

upper sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattttacaatat-taatattcttccgtctatcattcacatacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc--
|| ||  |||   |||||||||| || ||| | ||||||||||| |||||||||||| |||||||||||||| |  | | | || | ||||     | | |   ||| |     ||| | |  | |   | |      |  | || || | |||| |  | | | |      
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatatatgctatttataatgagaatgctttggtcacttg---acattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg

upper sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G070284_T02 (Zea mays), 5'ss of exon 6
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattttacaatat-taatattcttccgtctatcattc-acatacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc
|| || |||||  |||||||||| ||  || | ||| ||||||| |||||||||||| |||||||||||||| ||  || | || | ||||     | | |   ||| |  ||||    | ||  ||    || | | ||  | |  |||| |  ||   || |   |   
GGCCTTCATGCACTGGTTTATGACATCGATACGGCAGATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtagaaaattgctatttgtaatgaaaatactttggtcacttgacattttttatatcttcctttttgatattcttctgattttttaatttgtcactggata--

upper sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G13020.1 (Arabidopsis thaliana), 5'ss of exon 7
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattttacaatattaatattcttcc--gtctatcattcacatacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc--
|| |  |||||||| || |||||||| || || || |||||||| ||||| ||||| ||||||||||||||||    |||  || | | | ||  | |  |||||  ||     |   || |      |   || | || | |  |    | |    |  | || | ||    
GGGCGTCATGCTTTAGTGTATGATATTAACTCTGCGAATGAAACCTGGGAATGGGTAAATCTTAAAGAGgtaa----ttatgatttcagtttttctacttgtctaatatatctttcacatttgtacagaagatgatgctatgtcgtaaaatttggagagaccatgtgttgttt

upper sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 6
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattt-tacaatattaatattcttccgtctatcattcacatacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc----
||||  |||||| ||||||||||||| ||| || |||||||||| ||||| ||||| ||||| ||||||||||  ||  |      ||  |||   | | || || |||  | || ||   |    || |    || |||  |||   || || ||||   |||          
GGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgccttcctatatatgc-tcaatgattgtcttaaaaaaaa----taccacaatttttttgtttaaatttttattaactcatacagctatgaa