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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttatagtatactattagaaactgaggaatacatggactcctttaatatttctatttacatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAG

Basic information

species Glycine max
transcript GLYMA20G39100.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39100.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os09g10710.3 (Oryza sativa), 3'ss of exon 6
gtgtgtttatagtatactattagaaactgaggaatacatggactcctttaa-tatttctatttacatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAG
|| ||||  || |  | ||| ||  || |     |  ||  |  |||||     ||||||      |   ||| |||  ||  |||| |||| |||||| || ||| |||| |||||| |||||||||||||| |||||||| ||
gtttgttcttacttcattat-agctacagttctgttgattcaggcctttgggcttttctaagggattccattgcagGATCTGTATGCATTGGCTTATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG

upper sequence: GLYMA20G39100.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G049155_T03 (Zea mays), 3'ss of exon 5
gtgtgtttatagtatactattagaaactgaggaatacatggactcctttaatatttctatttacatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAG
||| |||| || ||||||    |  | | |    |   |  |  |      | |||||    | ||   ||| |||| ||  |||   |||||||||| || ||| | ||||||||||| |||||||||||| |||||||||||
gtgcgttt-tactatactg--gggtagttacttctcgtttaagcctccagctctttcttaggaaattcattgcagGGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAG

upper sequence: GLYMA20G39100.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G13020.1 (Arabidopsis thaliana), 3'ss of exon 6
------------------gtgtgtttatagtatactattagaaactgaggaatacatggactcctttaatatttctatttacatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAG
                   | | | | |||| |  || |   || |      |   ||   || |||| |   | | || | | |||   ||||| |  |||||||| || |||||||| || || || |||||||| ||||| ||||| ||||||||||||
gtatcttatctttcattgctatatat-tagtgttttagtgccaaatctccgttttctgatatcatttatttccttttttca-acattgattagGGGCGTCATGCTTTAGTGTATGATATTAACTCTGCGAATGAAACCTGGGAATGGGTAAATCTTAAAGAG

upper sequence: GLYMA20G39100.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g01350.t01 (Vitis vinifera), 3'ss of exon 5
gtgtgtttatagtatactattagaaactgagg-aatacatg---gactcctt--taatatttctattt-acatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAG
|| | ||| || | |   | || | | || |  | |||||    | || |||  |||  |  ||||||   | | |||  ||||||  |||||| ||||||||||||| ||| || |||||||||| ||||| ||||| ||||| ||||||
gtatattt-tactttttgactacataatgtgccagtacatatgaggcttcttcttaacctcgctattttgaaaaatttccagGGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaaactgaggaatacatggactcctttaatatttctatttacatattttgtagGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAG
                         ctttaat  putative branch site (score: 4)
                          tttaatatttctattt  TA-rich tract