1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTCCTCATATTCAAAATATGAGCAAGAGTGATAGCTTATCTTTCTGCACTGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAGgtaaaaataaaacaaaaaactatttgtagaattaatggctgtgactttattcagtttgaagtttgaactgaaaaaacacttttgagtggttatttggtcc...
species | Glycine max |
transcript | GLYMA20G39090.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAG CATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGCEST: gi|22523335|gb|BU082146.1|BU082146
genomic: ATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAGgtaaaaataa ... tttatatcagCATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGC
EST: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAG CATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGCEST: gi|10709358|gb|BF009082.1|BF009082
genomic: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAGgtaaaaataa ... tttatatcagCATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGC
EST: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAG CATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGCEST: gi|12489826|gb|BG043347.1|BG043347
genomic: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAGgtaaaaataa ... tttatatcagCATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGC
EST: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAG CATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGCEST: gi|21677670|gb|BQ630021.1|BQ630021
genomic: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAGgtaaaaataa ... tttatatcagCATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGC
EST: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAG CATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGC
genomic: TGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAGgtaaaaataa ... tttatatcagCATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCTCATATTCAAAATATGAGCAAGAGTGATAGCTTATCTTTCTGCACTGGTGATGAAGATCATTCTGTTGTAGATCTCACTTCAAATAAGTATGCAGgtaaaaataaaacaaaaaactatttgtagaattaatggctgtgactttattcagtttgaagtttgaactgaaaaaacacttttgagtggttatttggtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaaa