1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaaggatttttcttctaactccttgtctgctgcagcatgtgatttatcatgtattaacatgctactttctactagcacttactgtggtatttctatgcagCCTGAAATGGAGATGGTTAGTCGGGGCCTAGAAAAACACTTGAAACTGGAACAAAGAGAACACCTTATGTTTCTCTTTGGTAAAGTTTGTGGCGAGGACA
species | Glycine max |
transcript | GLYMA20G39010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAAAATATGCCTTCTTCTACGAATATTTCCTCCTGAGGAGTCTTCG CCTGAAATGGAGATGGTTAGTCGGGGCCTAGAAAAACACTTGAAACTGGAA
genomic: TGTCAAAAATATGCCTTCTTCTACGAATATTTCCTCCTGAGGAGTCTTCGgtgtgtatct ... ttctatgcagCCTGAAATGGAGATGGTTAGTCGGGGCCTAGAAAAACACTTGAAACTGGAA
atcatgtattaacatgctactttctactagcacttactgtggtatttctatgcagCCTGAAATGGAGATGGTTAGTCGGGGCCTAGAAAAACACTTGAAACTGGAACAAAGAGAACACCTTATGTTTCTCTTTGGTAAAGTTTGTGGCGAGGACA
tatttct CT-rich tract
tattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaggatttttcttctaactccttgtctgctgcagcatgtgatttatcatgtattaacatgctactttctactagcacttactgtggtatttctatgcagCCTGAAATGGAGATGGTTAGTCGGGGCCTAGAAAAACACTTGAAACTGGAACAAAGAGAACACCTTATGTTTCTCTTTGGTAAAGTTTGTGGCGAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - ctccttg
- - - - - - - - - - - - - ctgctgc
- - - - - - - - - - - - - - - - - gcatgtg
- - - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggta