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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatattattagccctgaattgttgtctatctctttgttcactgcttaatggcacctgttaatcatgctgtcttctcctattttatgaaatttgtttctattcagGGCACCAACTCACTCTACTTCAATTGATATTAATGGTGAGGATGCTCCACAATTCCTTACTGGATTTGCTGAAAATATCGGCCTTGAAAATGTTCGTGCT

Basic information

species Glycine max
transcript GLYMA20G39010.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39010.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0124g00550.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgatattattagccctgaattgttgtctatctctttgttcactgcttaatggcacctgttaatcatgctgtcttctcctattttatgaaatttgtttctatt-cagGGCACCAACTCACTCTACTTCAATTGATATTAATGGTGAGGATGCTCCACAATTCCTTACTGGATTTGCTGAAAATATCGGCCTTGAAAATGTTCGTGCT
      |||   | | |  |||      | ||| |       |  ||  ||   | |      ||  ||  | |||  |||  || ||    ||||     | |  ||||||  ||  ||| ||||||||  |||| ||| |||||||||||||||  |||||| || ||||| ||||||| ||| | || ||||||||   |||||| 
------tatggcttgac--gaaacaggatttatatagccaa-cgttgagtaggtggattgtaaaaatatcttttctcatccatttgtaacttatttaggaatttcacagGGCTTCAGGTCAGTCTACTTCTGTTGAGATTGATGGTGAGGATGCTCGGCAATTCATTGCTGGACTTGCTGATAATCTTGGGCTTGAAAACACTCGTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacctgttaatcatgctgtcttctcctattttatgaaatttgtttctattcagGGCACCAACTCACTCTACTTCAATTGATATTAATGGTGAGGATGCTCCACAATTCCTTACTGGATTTGCTGAAAATATCGGCCTTGAAAATGTTCGTGCT
      tgttaat  putative branch site (score: 3)
                                        tttgtttct  putative PPT
                            tattttatgaaatttg  TA-rich tract