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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctactatctagggttagggtttcttctctcctactctcttccaatcctctgatcccgttcctttccgttctgttttagggttcagTTCACAGAGTACATTCAGAAGAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTTACCACCGCCGCCGCCGCCAATTTCACGCGTGGCGAACTCG

Basic information

species Glycine max
transcript GLYMA20G38970.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38970.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g48930.1 (Oryza sativa), 3'ss of exon 1
---------------------------------------------------------gtatctactatctagggttagggttt--------cttctctcctactctcttccaatc----------------ctctgatccc-------gttcctttccgttctgtttt---agggttcagTTCACAGAGTACATTCAGAAGAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTTACCACCGCCGCCGCCGCCAATTTCACGCGTGGCGAACTCG
                                                         |  | |  | | ||||||| ||  ||        ||  || ||   |||  |    |                  | || |||        |||  | | | |  ||| ||   ||||| |||||||| |||| ||| ||||||||  ||  | ||||||||||||| |||  |||||| || | |||||||||| ||||||||||||| || |||       
gtaagaccccgccgccgcccccccctcctctcgatcctcgcgttcgatccgtccgccggttttgttttttagggtttggaattgcagcgatctggtcccccgatctggtttggttatggaaggggatgggtttttggtccttattgcggttggtgtgcttcgtgtgttcgcagGGTGCAGTTCACCGAGTTCATCCAGAAGAATCTCCACCTGTATCAGTTCCGCAACAACATCCCGCTCAGCACCGCCGCCACCGCCAATTTCACCCGCGGC-------

upper sequence: GLYMA20G38970.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0151g00690.t01 (Vitis vinifera), 3'ss of exon 1
--------gtatctactat---ctagggttagggtt-----tcttctctcctactctcttccaatcctctgatcccgttcctttccgttctgtttt--agggttcagTTCACAGAGTACATTCAGAAGAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTTACCACCGCCGCCGCCGCCAATTTCACGCGTGGCGAACTCG
        | || | | |    | |     ||| |      | |  | |  |  | | ||   |   | || |        |||   ||  |||||  || | |||||| || |||||||| |||||||| || || |||||||||||||||||||| || ||  | || || || ||||| || |||||||| || ||        
tttttcgtgcatttccgagagaccaaaaggaggatgattgatgtgatttgtttatttattttgaagttttggtaattaatgtttgtttttggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCGTAACGGGATTCCGTTGACGACAGCTGCCGCGGCGAATTTCACTCGAGGA-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426852|gb|CA938372.1|CA938372
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|27426852|gb|CA938372.1|CA938372
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|27426852|gb|CA938372.1|CA938372
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9901547|gb|BE610515.1|BE610515
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9901547|gb|BE610515.1|BE610515
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9901547|gb|BE610515.1|BE610515
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298196926|gb|HO041669.1|HO041669
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298196926|gb|HO041669.1|HO041669
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298196926|gb|HO041669.1|HO041669
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|254335231|gb|GR846728.1|GR846728
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|254335231|gb|GR846728.1|GR846728
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|254335231|gb|GR846728.1|GR846728
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9259295|gb|BE347372.1|BE347372
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9259295|gb|BE347372.1|BE347372
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9259295|gb|BE347372.1|BE347372
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|13480010|gb|BG509353.1|BG509353
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|13480010|gb|BG509353.1|BG509353
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|13480010|gb|BG509353.1|BG509353
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298177460|gb|HO023593.1|HO023593
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298177460|gb|HO023593.1|HO023593
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298177460|gb|HO023593.1|HO023593
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|254325949|gb|GR838830.1|GR838830
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|254325949|gb|GR838830.1|GR838830
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|254325949|gb|GR838830.1|GR838830
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|151397676|gb|EV267549.1|EV267549
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|151397676|gb|EV267549.1|EV267549
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|151397676|gb|EV267549.1|EV267549
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|15813614|gb|BI785889.1|BI785889
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|15813614|gb|BI785889.1|BI785889
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|15813614|gb|BI785889.1|BI785889
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9902807|gb|BE611775.1|BE611775
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9902807|gb|BE611775.1|BE611775
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|9902807|gb|BE611775.1|BE611775
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298195591|gb|HO043982.1|HO043982
EST:     CTCCTCGGTTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298195591|gb|HO043982.1|HO043982
EST:     CTCCTCGGTTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298195591|gb|HO043982.1|HO043982
EST:     CTCCTCGGTTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|21285827|gb|BQ473698.1|BQ473698
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|21285827|gb|BQ473698.1|BQ473698
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|21285827|gb|BQ473698.1|BQ473698
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|192300108|gb|FG992231.1|FG992231
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|192300108|gb|FG992231.1|FG992231
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|192300108|gb|FG992231.1|FG992231
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298172982|gb|HO019981.1|HO019981
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298172982|gb|HO019981.1|HO019981
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298172982|gb|HO019981.1|HO019981
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298165711|gb|HO008682.1|HO008682
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298165711|gb|HO008682.1|HO008682
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298165711|gb|HO008682.1|HO008682
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|58019270|gb|CX706012.1|CX706012
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         TTCACAGAGTACATTCAGAAGAACGTCGCCTTGTATCAGTTCCGTAACGGC
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcagTTCACAGAGTACATTCAGAAGAACGTCGCCTTGTATCAGTTCCGTAACGGC
EST: gi|298194947|gb|HO043419.1|HO043419
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298194947|gb|HO043419.1|HO043419
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|298194947|gb|HO043419.1|HO043419
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|4437057|gb|AI522922.1|AI522922
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|4437057|gb|AI522922.1|AI522922
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|4437057|gb|AI522922.1|AI522922
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|192305778|gb|FG995720.1|FG995720
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|192305778|gb|FG995720.1|FG995720
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-
EST: gi|192305778|gb|FG995720.1|FG995720
EST:     CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAG                         G
genomic: CTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tagggttcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactctcttccaatcctctgatcccgttcctttccgttctgttttagggttcagTTCACAGAGTACATTCAGAAGAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTTACCACCGCCGCCGCCGCCAATTTCACGCGTGGCGAACTCG
                ctctgat  putative branch site (score: 4)
                      tcccgttcctttccgt  CT-rich tract
                                        tgtttta  TA-rich tract