Sequence
atgc intronic sequence ATGC exonic sequencegtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG
Basic information
species | Glycine max |
transcript | GLYMA20G38960.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 7
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG
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---------------------------------------------------------------------------------gtgccttcttatgtcatg--tgcactttttctcttcagttcaaaattctatt-----tgtttttgtaaagtttgcgttgtggtttatgttttagGCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAG
upper sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 3'ss of exon 7
gtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG
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---------------------------------------------------------------------------taacaatgttttttcccctctgagtgtgagattttcaggatccagaatccctaatcttggacaaacatgtttacaatttactttttatttttattttcagGCAAAGAGAATGGATGTTGTTTGGGGAGAAACAGCTGGGGTAGATGGTCAATTATGGCTGTTGTGTCCCATACTTTTCATTTTACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207828433|gb|GD799718.1|GD799718EST: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG
tttttctctgtacttt CT-rich tract
attttatagttaatat TA-rich tract