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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagactctgatggcaaaatcaagatttaaggcaaagatgagaagaagcaagagcaagcagaggctgaattagcaagctgtcactttttttagttttgataggatcaggattttttgcactcatttcagttttgaccacagTGCAAGCTGGTGATAATTTTGGCTTGTTGTAGCATCAATCATTTACAAGTTTAAGCATAAACATAAATTTGGATTAAAATGATATTACGATACTACAATT

Basic information

species Glycine max
transcript GLYMA20G38960.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 10
lower sequence: AT4G10430.2 (Arabidopsis thaliana), 3'ss of exon 9
gtacagactctgatggcaaaatcaagatttaaggcaaagatgagaagaagcaagagcaagcagaggctgaattagcaagctgtcactttttttagttttgataggatcaggattttttgcactcatttcagttttgaccacagTGCAAGCTGGTGATAATTTTGGCTTGTTGTAGCATCAATCATTTACAAGTTTAAGCATAAACATAAATTTGGATTAAAATGATATTACGATACTACAATT
          |   |||  |  |||    | |  |||    ||  | |  | | |  ||   || |  || | ||     |||      ||| ||           | | | ||| | | | ||       || ||       ||  || |||  |   ||      |   ||||   || | ||   |||  | |||  | ||   |||  ||                             
---------gtataggccga--caaatcctgattcaatagagaataaagactaaaaaaataggaagtagagtaagaggaatgttgtcgctttcag-

upper sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 10
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacagact-ctgatggcaaaatcaagatttaaggcaaagatgagaagaagcaagagcaagcagaggctgaattagcaagctgtcactttttttagttttgataggatcaggattttttgcactcatttcagttttgaccacagTGCAAGCTGGTGATAATTTTG-GCTTGTTGTAGCA-TCAATCATTTACAAGTTTAAGCATAAACATAAATT-TGGATTAAAATGATATTACGATACTACAATT
||| |   | || |         ||   |||    |     | |      | |   ||   || |  |||| | |  |     | |    |   |      ||||||    || |    | | |  | ||  |||        |||   | | |||  | | ||  | | ||  | ||| |     | ||   |  |  || | | |||   ||     | | ||  | ||   | |   |      
gtatatttttctcactctcgtggcattgttttcaacgggtct-attcccggtataggccgacaaatcctgattcaatagagaataaagactaaaaa----aataggaagtagagtaagaggaatgttgtcgctttcag-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagttttgataggatcaggattttttgcactcatttcagttttgaccacagTGCAAGCTGGTGATAATTTTGGCTTGTTGTAGCATCAATCATTTACAAGTTTAAGCATAAACATAAATTTGGATTAAAATGATATTACGATACTACAATT
                                           ttttgac  putative branch site (score: 3)
                       atttttt  TA-rich tract