1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attcaaacagcattaataaaatgaattccgatttatatgtataattcatttatactatatttacttaaacattatttaatgctgcttgctacattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAAGTGGAGAAATTAAATAGTTGAACTTTTTTTTGTTTTTTCTCAAAATTG
species | Glycine max |
transcript | GLYMA20G38630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAEST: gi|193544966|gb|FK504299.1|FK504299
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAEST: gi|193630552|gb|FK584105.1|FK584105
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAEST: gi|193659389|gb|FK605972.1|FK605972
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAGAGGTGTGGAACAAGAATTGGATGCTGAEST: gi|193411504|gb|FK381579.1|FK381579
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAEST: gi|193392603|gb|FK358762.1|FK358762
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAEST: gi|208051204|gb|GD846707.1|GD846707
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAEST: gi|193448629|gb|FK413354.1|FK413354
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGEST: gi|192327952|gb|FK021699.1|FK021699
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATG
EST: TGACTCTGAAATCAG-CATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAG-TGTGGA-CA-GA-TTGGATGCTGAG-ATGATGGAGCAGCATTAEST: gi|193328310|gb|FK294331.1|FK294331
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAEST: gi|193338444|gb|FK303385.1|FK303385
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTA
EST: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAG GTCAAAAGGTGTGGAAACAAGAATTGGATGCTGAGGATGATGGAGCAGCAT
genomic: TGACTCTGAAATCAGGCATTGAAAATATGCTGATGCATTATGTTCCTGAGgtaacaagtt ... acattttcagGTCAAA-GGTGTGGAA-CAAGAATTGGATGCTGAGGATGATGGAGCAGCAT
tcatttatactatatttacttaaacattatttaatgctgcttgctacattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAAGTGGAGAAATTAAATAGTTGAACTTTTTTTTGTTTTTTCTCAAAATTG
atttaat putative branch site (score: 4)
cattttc putative PPT
tatactatatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcaaacagcattaataaaatgaattccgatttatatgtataattcatttatactatatttacttaaacattatttaatgctgcttgctacattttcagGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGATGATGGAGCAGCATTAAGTGGAGAAATTAAATAGTTGAACTTTTTTTTGTTTTTTCTCAAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- tcaaaca
- - - - - - - aataaaa
- - - - - - - - - - -tgaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgct