1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctccatatcatccgcatcacaacccactgattgggttcttggtttgtctattgctgtgggaagtgatttcctaacagttgttattatttggctcatgcagAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGTTGGCAAAGGCAAAGGCTGCTCCTGATATAAATCCAAACCTAATAGAAA
species | Glycine max |
transcript | GLYMA20G38600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGAGGAAGGAAAATGGTCAAGAGATGCTGAAACAATCAAATTGAAG AGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGEST: gi|208025982|gb|GD825192.1|GD825192
genomic: TTGTGGAGGAAGGAAAATGGTCAAGAGATGCTGAAACAATCAAATTGAAGgtatctttat ... gctcatgcagAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAG
EST: TCAAGAGATGCTGAAACAATCAAATTGAAG AGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGEST: gi|298175287|gb|HO018168.1|HO018168
genomic: TCAAGAGATGCTGAAACAATCAAATTGAAGgtatctttat ... gctcatgcagAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAG
EST: TTGTGGAGGAAGGAAAATGGTCAAGAGATGCTGAAACAATCAAATTGAAG AGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGEST: gi|24136263|gb|BU926773.1|BU926773
genomic: TTGTGGAGGAAGGAAAATGGTCAAGAGATGCTGAAACAATCAAATTGAAGgtatctttat ... gctcatgcagAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAG
EST: TTGTGGAGGAAGGAAAATGGTCAAGAGATGCTGAAACAATCAAATTGAAG AGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAG
genomic: TTGTGGAGGAAGGAAAATGGTCAAGAGATGCTGAAACAATCAAATTGAAGgtatctttat ... gctcatgcagAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAG
gtctattgctgtgggaagtgatttcctaacagttgttattatttggctcatgcagAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGTTGGCAAAGGCAAAGGCTGCTCCTGATATAAATCCAAACCTAATAGAAA
tcctaac putative branch site (score: 1)
agttgttattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccatatcatccgcatcacaacccactgattgggttcttggtttgtctattgctgtgggaagtgatttcctaacagttgttattatttggctcatgcagAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGTTGGCAAAGGCAAAGGCTGCTCCTGATATAAATCCAAACCTAATAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - catccgc
- - - - - - - - -cacaacc
- - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - ttgctgt