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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgctgtttaattgcttttattagttttttttttcctacttggattgggtttcatgtcgtgacactagaatttgtactgaacattccagGTCAACATTAACAAACAGAAGAAAGATGCATTTGAAATACTAAAACCTGTATTGGATGTCGATCCTGAATCTAATCCTCATTTTGATGCAACAATGGGTA

Basic information

species Glycine max
transcript GLYMA20G38600.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0067g03760.t01 (Vitis vinifera), 3'ss of exon 3
------------gtgtgctgtttaattgcttttattagttttttttttcctacttggattgggtttcatgtcgtgacactagaatttgtactgaacattccagGTCAACATTAACAAACAGAAGAAAGATGCATTTGAAATACTAAAACCTGTATTGGATGTCGATCCTGAATCTAATCCTCATTTTGATGCAACAATGGGTA
               |    |  || |  ||   ||  ||  | ||||    |||    | |  ||  |||  |  | ||    || || |  |    ||||||||||||| ||||| ||||| || || |||||  |||| || ||||||| ||| ||||| ||||| || || ||||||||||||||| |||  |||||||
ttcctctcaaaaaaataaaataaaactatttgggtttcttaatctttttagccttctgcttg--ttagtgttttt-ctctcatcttcgttcaaacttctccagGTCAACATCAACAAGCAGAAAAAGGACGCATTCCAAATTCTTAAACCTGAATTAGATGTGGATCCGGAGTCAAATCCTCATTTTGATTCAAGGATGGGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186468|gb|HO037101.1|HO037101
EST:     ATGGAAATGTTGTTAATGTGACTAAACCCAGCAACCTTAGTACATTAAAG                         GTCAACATTAACAAACAGAAGAAAGATGCATTTGAAATACTAAAACCTGTA
genomic: ATGGAAATGTTGTTAATGTGACTAAACCCAGCAACCTTAGTACATTAAAGgtgtgctgtt ... aacattccagGTCAACATTAACAAACAGAAGAAAGATGCATTTGAAATACTAAAACCTGTA
EST: gi|298175287|gb|HO018168.1|HO018168
EST:     ATGGAAATGTTGTTAATGTGACTAAACCCAGCAACCTTAGTACATTAAAG                         GTCAACATTAACAAACAGAAGAAAGATGCATTTGAAATACTAAAACCTGTA
genomic: ATGGAAATGTTGTTAATGTGACTAAACCCAGCAACCTTAGTACATTAAAGgtgtgctgtt ... aacattccagGTCAACATTAACAAACAGAAGAAAGATGCATTTGAAATACTAAAACCTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctacttggattgggtttcatgtcgtgacactagaatttgtactgaacattccagGTCAACATTAACAAACAGAAGAAAGATGCATTTGAAATACTAAAACCTGTATTGGATGTCGATCCTGAATCTAATCCTCATTTTGATGCAACAATGGGTA
                               tagaattt  TA-rich tract