Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGAAGCAATAGACAAGTTTCTTTCTGTTTTCAAAGACCTAACATTCCCACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtcttactcatgcatcatatgccatgtttattctattctaataaaactagtacttttttgtttcaattttttaatacatgtaaatgtaatgaaaacag

Basic information

species Glycine max
transcript GLYMA20G38580.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193554668|gb|FK513867.1|FK513867
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192317778|gb|FK010168.1|FK010168
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTTTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192331233|gb|FK020972.1|FK020972
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120495314|gb|EH223481.1|EH223481
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193360650|gb|FK325966.1|FK325966
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192314748|gb|FK005988.1|FK005988
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|7639519|gb|AW733840.1|AW733840
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|14989882|gb|BI315563.1|BI315563
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208295317|gb|GE095262.1|GE095262
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193581031|gb|FK535972.1|FK535972
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|298199618|gb|HO043495.1|HO043495
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|21889254|gb|BQ742467.1|BQ742467
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120495306|gb|EH223473.1|EH223473
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192317777|gb|FK010167.1|FK010167
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192324621|gb|FK016812.1|FK016812
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208058213|gb|GD859798.1|GD859798
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208332340|gb|GE129431.1|GE129431
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|151405641|gb|EV275455.1|EV275455
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208282087|gb|GE080241.1|GE080241
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTCACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208298430|gb|GE096207.1|GE096207
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACG
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACG
EST: gi|207767460|gb|GD740208.1|GD740208
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCCGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|298172622|gb|HO019662.1|HO019662
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGCGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|14259768|gb|BG882676.1|BG882676
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCA
EST: gi|298196746|gb|HO041489.1|HO041489
EST:     CACCAGGCTCCTCTATCCTTTTCGCTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGGGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193513875|gb|FK468259.1|FK468259
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|19053916|gb|BM732583.1|BM732583
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192330502|gb|FK021233.1|FK021233
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208236111|gb|GE033419.1|GE033419
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCACTCCA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCA
EST: gi|120495572|gb|EH223739.1|EH223739
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATT
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATT
EST: gi|151395150|gb|EV265021.1|EV265021
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|19052465|gb|BM731132.1|BM731132
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120494463|gb|EH222630.1|EH222630
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192310807|gb|FK000307.1|FK000307
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120495438|gb|EH223605.1|EH223605
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120494592|gb|EH222759.1|EH222759
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|151405217|gb|EV275031.1|EV275031
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120492204|gb|EH220371.1|EH220371
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208187206|gb|GD982156.1|GD982156
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGA
EST: gi|298186217|gb|HO036850.1|HO036850
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192331232|gb|FK020971.1|FK020971
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192301199|gb|FG988034.1|FG988034
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|298188766|gb|HO035459.1|HO035459
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|19052630|gb|BM731297.1|BM731297
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208170410|gb|GD968861.1|GD968861
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|298196176|gb|HO044567.1|HO044567
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208199625|gb|GD996478.1|GD996478
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACC
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACC
EST: gi|31311644|gb|CD396847.1|CD396847
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120491864|gb|EH220031.1|EH220031
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193400754|gb|FK368367.1|FK368367
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192330503|gb|FK021234.1|FK021234
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193528032|gb|FK484654.1|FK484654
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|10252649|gb|BE820415.1|BE820415
EST:     CACCAGGCTCCTGTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|298171453|gb|HO016485.1|HO016485
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192322600|gb|FK014721.1|FK014721
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|298194976|gb|HO043504.1|HO043504
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|208186727|gb|GD983497.1|GD983497
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193375532|gb|FK341673.1|FK341673
EST:     ACTG-CTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: ACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|19053692|gb|BM732359.1|BM732359
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120495464|gb|EH223631.1|EH223631
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|120495570|gb|EH223737.1|EH223737
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192310808|gb|FK000308.1|FK000308
EST:     TCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: TCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193725071|gb|FK659281.1|FK659281
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|14125296|gb|BG789734.1|BG789734
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193539087|gb|FK497315.1|FK497315
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|193688821|gb|FK627826.1|FK627826
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAA
EST: gi|298188616|gb|HO035309.1|HO035309
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAAA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAA
EST: gi|120494817|gb|EH222984.1|EH222984
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|192314747|gb|FK005987.1|FK005987
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA
EST: gi|298191395|gb|HO038874.1|HO038874
EST:     CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACG                         ATAAGTTTCTCTAGTGATGAGACCATTCCAGAAGTTACGAGTGCTGTTATA
genomic: CACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtctta ... atgaaaacagATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCGAAGCAATAGACAAGTTTCTTTCTGTTTTCAAAGACCTAACATTCCCACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGgttagtcttactcatgcatcatatgccatgtttattctattctaataaaactagtacttttttgtttcaattttttaatacatgtaaatgtaatgaaaacag

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