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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaaataactaactcaccactttttccgcatcatatgtcacattatgtaccaccagcatatgcattaactttcgtgagggttgttttagtttaactaaagatgttgaattgagttttgttattgatgtaaaactatatatataaaaaaacaatgttttgagattgagattgtaacatgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGCAGCAATACTCAGAGAAAGTGGCAGAAAATTGTGTGGCCATTTGGAGGTC

Basic information

species Glycine max
transcript GLYMA20G38580.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317778|gb|FK010168.1|FK010168
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|208209339|gb|GE008159.1|GE008159
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192331233|gb|FK020972.1|FK020972
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|120495314|gb|EH223481.1|EH223481
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192314748|gb|FK005988.1|FK005988
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|7639519|gb|AW733840.1|AW733840
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|14989882|gb|BI315563.1|BI315563
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298199618|gb|HO043495.1|HO043495
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192317777|gb|FK010167.1|FK010167
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192324621|gb|FK016812.1|FK016812
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|151405641|gb|EV275455.1|EV275455
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298172622|gb|HO019662.1|HO019662
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|14259768|gb|BG882676.1|BG882676
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298196746|gb|HO041489.1|HO041489
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|19053916|gb|BM732583.1|BM732583
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192330502|gb|FK021233.1|FK021233
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298177149|gb|HO027044.1|HO027044
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|120495572|gb|EH223739.1|EH223739
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|151395150|gb|EV265021.1|EV265021
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|19052465|gb|BM731132.1|BM731132
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTATAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298172007|gb|HO021599.1|HO021599
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|120494463|gb|EH222630.1|EH222630
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192310807|gb|FK000307.1|FK000307
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|120494592|gb|EH222759.1|EH222759
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|151405217|gb|EV275031.1|EV275031
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|120492204|gb|EH220371.1|EH220371
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|193527208|gb|FK483390.1|FK483390
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298186217|gb|HO036850.1|HO036850
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192331232|gb|FK020971.1|FK020971
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192301199|gb|FG988034.1|FG988034
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298188766|gb|HO035459.1|HO035459
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|208305858|gb|GE109537.1|GE109537
EST:     GATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: GATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|19052630|gb|BM731297.1|BM731297
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298196176|gb|HO044567.1|HO044567
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAGACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|193415939|gb|FK381543.1|FK381543
EST:     TACTCCCCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|208199625|gb|GD996478.1|GD996478
EST:     GATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: GATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|207773863|gb|GD742803.1|GD742803
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGA
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGG-
EST: gi|193382286|gb|FK347611.1|FK347611
EST:     TACTCCCCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192330503|gb|FK021234.1|FK021234
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298171453|gb|HO016485.1|HO016485
EST:     TGCTCACCAGTTAACGGGATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192322600|gb|FK014721.1|FK014721
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298197770|gb|HO039309.1|HO039309
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298194976|gb|HO043504.1|HO043504
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|19053692|gb|BM732359.1|BM732359
EST:     CGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: CGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|120495464|gb|EH223631.1|EH223631
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|7029030|gb|AW458813.1|AW458813
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GCAGGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACG
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagG----TCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACG
EST: gi|298178008|gb|HO023857.1|HO023857
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|193688821|gb|FK627826.1|FK627826
EST:     ATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: ATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298188616|gb|HO035309.1|HO035309
EST:     TGCTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|120494817|gb|EH222984.1|EH222984
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|192314747|gb|FK005987.1|FK005987
EST:     TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
EST: gi|298191395|gb|HO038874.1|HO038874
EST:     TGCTCACCAGTTAACGGAATCCGACCAACTCTTCTCAGATATCGTTACAG                         GTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC
genomic: TACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGgtaactaaat ... atgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatatatataaaaaaacaatgttttgagattgagattgtaacatgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGCAGCAATACTCAGAGAAAGTGGCAGAAAATTGTGTGGCCATTTGGAGGTC
                                      ttgtaac  putative branch site (score: 2)
     tatatataaaaaaaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactaaataactaactcaccactttttccgcatcatatgtcacattatgtaccaccagcatatgcattaactttcgtgagggttgttttagtttaactaaagatgttgaattgagttttgttattgatgtaaaactatatatataaaaaaacaatgttttgagattgagattgtaacatgcatgcagGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGCAGCAATACTCAGAGAAAGTGGCAGAAAATTGTGTGGCCATTTGGAGGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
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