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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAAGCTATTGAGGAATTTAGAAATGCTTTCAAGGATCAAAATTTCCCACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataatcaccaattgcatctgaaattgaagactaggaagctgcactgcacatatattatatatagtttaattttctccgtggcagcatgttttatatattttcacaagtttgattaattttgtacaaatgcag

Basic information

species Glycine max
transcript GLYMA20G38570.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254313744|gb|GR831373.1|GR831373
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|151413247|gb|EV283055.1|EV283055
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|37996139|gb|CF807728.1|CF807728
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACC
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACC
EST: gi|38192772|gb|CF921978.1|CF921978
EST:     CACCAGGCTCCACTGTTTTCTACAAACAACCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|192323410|gb|FK019001.1|FK019001
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|254313745|gb|GR831374.1|GR831374
EST:     CACCAGGCTCCACTTTTTTCTACAAACAATCCCCCACTGGAACATTGGGG                         TTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|7924175|gb|AW830201.1|AW830201
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|58020340|gb|CX707082.1|CX707082
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|16105139|gb|BI892879.1|BI892879
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|192324631|gb|FK016822.1|FK016822
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACATGAGCATGCAGTGATA
EST: gi|15204524|gb|BI427292.1|BI427292
EST:     CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGG                         CTTAGTTTCTCGAAAGATGAGACAATACCAGAACAT
genomic: CACCAGGCTCCACTGTTTTCTACAAACAATCACCCACTGGAACATTGGGGgttagtataa ... acaaatgcagCTTAGTTTCTCGAAAGATGAGACAATACCAGAACAT