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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCAGCATCCATCACTAATGTCACTGTGGAGTTCCTTCAATTCCCCGCACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaatactttcattatcctttgttactatccttaaattatttgcatgcatatttggaaaaaaaaaatatgtctaccttatttttttaatataaag...

Basic information

species Glycine max
transcript GLYMA20G38570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254313744|gb|GR831373.1|GR831373
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|151401078|gb|EV270892.1|EV270892
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|151413247|gb|EV283055.1|EV283055
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|23057621|gb|BU578246.1|BU578246
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|37996139|gb|CF807728.1|CF807728
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAN                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|38192772|gb|CF921978.1|CF921978
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|7924175|gb|AW830201.1|AW830201
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|58020340|gb|CX707082.1|CX707082
EST:     ACTGGTGACACTTCCTGGCTCTACCAAATCCTATTTCCTGGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|192324631|gb|FK016822.1|FK016822
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|5342646|gb|AI794930.1|AI794930
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
EST: gi|15204524|gb|BI427292.1|BI427292
EST:     ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAG                         GGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG
genomic: ACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaat ... acttttgtagGGGTGAGAGGGTTGAATATTCAAGAAGAATTTGTGAAGTTCACGGGAATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACACCAGCATCCATCACTAATGTCACTGTGGAGTTCCTTCAATTCCCCGCACTGGTGACACCTCCTGGCTCTACCAAATCCTATTTCCTTGGCGGCGCAGgttcttaaatactttcattatcctttgttactatccttaaattatttgcatgcatatttggaaaaaaaaaatatgtctaccttatttttttaatataaag

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