1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acatacatgcaaaccccctatatatttttaagcatccattttccattatagttccctcaaataaaaatctaatactatggtttctcaaattcgtgtgcagATAGTGAATGAGTTATTACATCTACCAGACACCAATGTGAATGCATTAACCAGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCCCTCTCTG
species | Glycine max |
transcript | GLYMA20G38510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTCGGTAACACGGCGTTGCATGTGGCAACCAGGAAAAAGCGAGTAGAG ATAGTGAATGAGTTATTACATCTACCAGACACCAATGTGAATGCATTAACC
genomic: AATTCGGTAACACGGCGTTGCATGTGGCAACCAGGAAAAAGCGAGTAGAGgtatgtcaac ... tcgtgtgcagATAGTGAATGAGTTATTACATCTACCAGACACCAATGTGAATGCATTAACC
ttatagttccctcaaataaaaatctaatactatggtttctcaaattcgtgtgcagATAGTGAATGAGTTATTACATCTACCAGACACCAATGTGAATGCATTAACCAGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCCCTCTCTG
atctaat putative branch site (score: 3)
tcaaataaaaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatacatgcaaaccccctatatatttttaagcatccattttccattatagttccctcaaataaaaatctaatactatggtttctcaaattcgtgtgcagATAGTGAATGAGTTATTACATCTACCAGACACCAATGTGAATGCATTAACCAGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCCCTCTCTG
- - acatgca
- - - - - - -cccccta
- - - - - - - - - - - - - - - -gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa