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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctctctctctctttctatcttcatcgttctaaatttttaatttttcgatgacccttttgcttgcgtgtatcagGACCCGGAGCTGAAGGGCAAGGAGAGAAGGACCCATTTTGTGAGATATCGCCGTCTCCTTCTCCATCGTCGGCGACGGCGCCGGCGCTGGTGCTGTCGAA

Basic information

species Glycine max
transcript GLYMA20G38510.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348750|gb|BI974345.1|BI974345
EST:     TGCTCTGCTTTCTTCCACCATTGCCATGGCCTCCCACTCAAACCAACCAG                         GACCCGGAGCTGAAGGGCAAGGAGAGAAGGACCCATTTTGTGAGATATCGC
genomic: TGCTCTGCTTTCTTCCACCATTGCCATGGCCTCCCACTCAAACCAACCAGgttctctctc ... cgtgtatcagGACCCGGAGCTGAAGGGCAAGGAGAGAAGGACCCATTTTGTGAGATATCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatcgttctaaatttttaatttttcgatgacccttttgcttgcgtgtatcagGACCCGGAGCTGAAGGGCAAGGAGAGAAGGACCCATTTTGTGAGATATCGCCGTCTCCTTCTCCATCGTCGGCGACGGCGCCGGCGCTGGTGCTGTCGAA
        ttctaaatttttaatt  TA-rich tract