Sequence
atgc intronic sequence ATGC exonic sequenceGCAAAGACAGCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCCAGTGTGGAATCCCAGgtgagtgtgctgctatcatccttagatctttttttaaaattttctttgcatgctaactgatgtgcaagatttaggagactaattgatttcttgaaaatcattttacag
Basic information
species | Glycine max |
transcript | GLYMA20G38490.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G38490.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G55140.2 (Arabidopsis thaliana), 5'ss of exon 2
GCAAAGACAGCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCCAGTGTGGAATCCCAGgtgagtgtgctgctatcatccttagatctttttttaaaattttctttgcatgctaactgatgtgcaagatttaggagactaattgatttcttgaaaatcattttacag
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GCAGAGACAACCTCGTCTCAGATTTGGAAAAGTTCATTTGTACAACAACTACACAAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTAGAAGCGCAGgtaaact--cttttgcagatcttagatcattgcttgaggtctcacctgaagatt--cttatgtttctgaaatcag---------------------------------
upper sequence: GLYMA20G38490.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0317g00150.t01 (Vitis vinifera), 5'ss of exon 3
GCAAAGACAGCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCCAGTGTGGAATCCCAGgtgagtgtgctgctatcatcctta-------gatctttttttaaa--attttctttgcatgctaactgatgtgcaagatttaggagactaattgatttcttgaaaatcattttacag-----------------
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GCAAAGGCAGCCTCGTGTTAGGTTTGGAAAAGTTCATCTGTATAACAATTACACCAGAAATTGGAGTGTGTATGCTGTTTGTGCTAGTGTTGAATCACAGgtaaatgatatcttaataccttaaacgtattgatgtctctgtacattatgttatttgcagggca-taaagattttatcttttattatgtaattgaaatctgttacatttttcttggtatttttattgctatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51341454|gb|CO982771.1|CO982771EST: ACACCAGAAACTGGGGGATATATGCTGTTTGTGCCAGTGTGGAATCCCAG ATATACTCTCAGTGTAATGTATATGAAGCAGGAACTAAGAAAAAGACTTTT
genomic: ACACCAGAAACTGGGGGATATATGCTGTTTGTGCCAGTGTGGAATCCCAGgtgagtgtgc ... cattttacagATATACTCTCAGTGTAATGTATATGAAGCAGGAACTAAGAAAAAGACTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAAGACAGCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCCAGTGTGGAATCCCAGgtgagtgtgctgctatcatccttagatctttttttaaaattttctttgcatgctaactgatgtgcaagatttaggagactaattgatttcttgaaaatcattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT