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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTCTAGGCATATATGGATTGATCGATGCACCCTTCGTGATTACGATGATGGCCTCATAGACATTACAAGACAAAGCACCGATATCACTGTATCTAGgtgggcttattttctccattttcaattgtattacaatagtggtttgtcacatattcgactcctattaagtgagtaagggtaacgtatgcaatctcagttg...

Basic information

species Glycine max
transcript GLYMA20G38490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38490.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G55140.2 (Arabidopsis thaliana), 5'ss of exon 1
CAAATTCTAGGCATATATGGATTGATCGATGCACCCTTCGTGATTACGATGATGGCCTCATAGACATTACAAGACAAAGCACCGATATCACTGTATCTAGgtgggcttattttctccattttcaattgtattacaatagtggtttgtcacatattcgactcctattaagtgagtaagggtaacgtatgcaatctcagttg
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CAAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTCCGCGATTACGATGATGGGCTTATTGATATTACTAGACAAAGCACGGATATTACTGTTTCTAGgtgaggtt----tgatgattttggatggt--tatggttagggtaatgtatgctcttgactggtgcttaatgt-tgcttctggtttctacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349398|gb|BI974993.1|BI974993
EST:     GATGGCCTCATAGACATTACAAGACAAAGCACCGATATCACTGTATCTAG                         GTGTTGCTTTGGGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGAC
genomic: GATGGCCTCATAGACATTACAAGACAAAGCACCGATATCACTGTATCTAGgtgggcttat ... gtggcaccagGTGTTGCTTTGGGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGAC