Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctgaaaccgttgttctgtgttcgttcgttcattgttgttgtgatgaattggtgtaaatgataaaaggcattgtttttgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGAATCAACTGAAGGACCTGAAGGCGGAGCTTGCCTTGCTTCGTGTTGCTAA

Basic information

species Glycine max
transcript GLYMA20G38480.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606134|gb|AI900232.1|AI900232
EST:     AAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|18039523|gb|BM307817.1|BM307817
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|254318392|gb|GR832560.1|GR832560
EST:     GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|31472655|gb|CD414683.1|CD414683
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|151396919|gb|EV266792.1|EV266792
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|27427487|gb|CA939007.1|CA939007
EST:     GCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|31475415|gb|CD417443.1|CD417443
EST:     AGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|254329372|gb|GR833744.1|GR833744
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|7640442|gb|AW734744.1|AW734744
EST:     GAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|193435718|gb|FK401660.1|FK401660
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6718736|gb|AW306383.1|AW306383
EST:     AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|7030236|gb|AW460019.1|AW460019
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6724731|gb|AW309130.1|AW309130
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|42723218|gb|CK769117.1|CK769117
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|58014494|gb|CX701236.1|CX701236
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|23729909|gb|BU763062.1|BU763062
EST:     GTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|4297362|gb|AI442607.1|AI442607
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|193673152|gb|FK619014.1|FK619014
EST:     GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6718864|gb|AW306511.1|AW306511
EST:     AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|23733284|gb|BU764823.1|BU764823
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|9203879|gb|BE330103.1|BE330103
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|19053062|gb|BM731729.1|BM731729
EST:     GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|17400104|gb|BM176886.1|BM176886
EST:     TCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: TCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|31309274|gb|CD394477.1|CD394477
EST:     AAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|207824241|gb|GD795028.1|GD795028
EST:     GCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|31306508|gb|CD391711.1|CD391711
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|7284973|gb|AW597460.1|AW597460
EST:     TGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: TGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|14990784|gb|BI316457.1|BI316457
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|21285622|gb|BQ473493.1|BQ473493
EST:     CAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: CAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|19269748|gb|BM886004.1|BM886004
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|10846195|gb|BF069156.1|BF069156
EST:     GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCACAAGACGAAGGCTGATCTGCTGA
genomic: GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|209704279|gb|BW683507.1|BW683507
EST:     AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|213591965|gb|DB963900.1|DB963900
EST:     GGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|208041994|gb|GD842170.1|GD842170
EST:     GCAGCCGTAGC-AAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|58022490|gb|CX709231.1|CX709231
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6134473|gb|AW132866.1|AW132866
EST:     GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|193478025|gb|FK440570.1|FK440570
EST:     GGCGCAGCCGTTGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|58022259|gb|CX709000.1|CX709000
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|13181372|gb|BG352773.1|BG352773
EST:     CAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: CAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|18690681|gb|BM519529.1|BM519529
EST:     CTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: CTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|298178726|gb|HO024461.1|HO024461
EST:     AAGCTAAGAGGCACAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|10846211|gb|BF071290.1|BF071290
EST:     GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|15201529|gb|BI424920.1|BI424920
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|9902611|gb|BE611642.1|BE611642
EST:     GCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|19269475|gb|BM885731.1|BM885731
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|37994873|gb|CF806462.1|CF806462
EST:     AGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|208143076|gb|GD942794.1|GD942794
EST:     GGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|16346430|gb|BI972025.1|BI972025
EST:     TCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: TCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|13788946|gb|BG651537.1|BG651537
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|213595826|gb|DB981506.1|DB981506
EST:     GAATTGCTAGCAATGG                         CGAGGATCAAGGTTCACGAGCTGAGGCAGAAGACGAAGGCTTTTTTGCTGA
genomic: GAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|151413086|gb|EV282894.1|EV282894
EST:     GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|5606806|gb|AI900904.1|AI900904
EST:     AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|7925522|gb|AW831548.1|AW831548
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6846516|gb|AW348806.1|AW348806
EST:     AAGAGGCGCAGNNNTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|213602149|gb|DB962642.1|DB962642
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|17964718|gb|BM271449.1|BM271449
EST:     GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6666563|gb|AW278022.1|AW278022
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|207782005|gb|GD754794.1|GD754794
EST:     GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: GAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6952317|gb|AW424385.1|AW424385
EST:     GCTAAGAGGCACAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACAAAGGCTGATCTGCTGA
genomic: GCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|5820110|gb|AI988316.1|AI988316
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|23735260|gb|BU765902.1|BU765902
EST:     CAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: CAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|4305027|gb|AI443703.1|AI443703
EST:     CCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: CCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|21602685|gb|BQ613016.1|BQ613016
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|151405770|gb|EV275584.1|EV275584
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|151399170|gb|EV269041.1|EV269041
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|6455025|gb|AW185708.1|AW185708
EST:     CGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: CGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|254323230|gb|GR840035.1|GR840035
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|7587827|gb|AW703635.1|AW703635
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|21285548|gb|BQ473419.1|BQ473419
EST:     CAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: CAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|41145711|gb|CK605922.1|CK605922
EST:     AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AAGCTAAGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
EST: gi|7284378|gb|AW596970.1|AW596970
EST:     AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGG                         CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA
genomic: AGAGGCGCAGCCGTAGCAAAAGCTCGTGGAATTGCTAGCAATGGgtaatttctg ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgttgtgatgaattggtgtaaatgataaaaggcattgtttttgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGAATCAACTGAAGGACCTGAAGGCGGAGCTTGCCTTGCTTCGTGTTGCTAA
                                      ttgttttt  CT-rich tract
                    tgtaaatgataaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttctgaaaccgttgttctgtgttcgttcgttcattgttgttgtgatgaattggtgtaaatgataaaaggcattgtttttgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGCTGAATCAACTGAAGGACCTGAAGGCGGAGCTTGCCTTGCTTCGTGTTGCTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT