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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAACAAGAGCAGAGTTAAGGACATCTCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTATTCAAGgttagtattatgactttcattggtgattaaagtcttgttaaccataatgtaagttgttgttaggttattccaaccaagtataatctgcacaaaaattcca...

Basic information

species Glycine max
transcript GLYMA20G37330.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 2
CGAAACAAGAGCAGAGTTAAGGACATCTCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTATTCAAGgttagtattatgactttcattggtgattaaagtcttgttaaccataatgtaagttgttgttaggttattccaaccaagtataatct--gcacaaaaattcca
 ||||  |||  ||| || |||||||||||||||||||   | |||||| |||||||||||| |||||| || ||  | || ||||||||||| |||||||| ||   | ||||| |||||  | | |  |||||  | | ||   |  | |     |||    || | |   |      |  |||  | |  |||  || |
GGAAAGCAGAAAAGATTTGAGGACATCTCTTCACACAAGCATTTTGCCTGTTGGGTCCTTAAGTATTGGCCTTTCACGTCACCGTGCTTTGCTTTTCAAGgtgagctatttgactgtcatt--tcactgtagtctcttgagcctagagcttatcaagtgtagtcttttcctggctgtccctgctcttggaatcaaacatcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311959|gb|BG405610.1|BG405610
EST:     TTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTATTCAAG                         GTATTAGCTGACAACATTAATATGCCTTGTAGACTGTTAAAAGGTAGTCAT
genomic: TTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTATTCAAGgttagtatta ... ctgcattcagGTATTAGCTGACAACATTAATATGCCTTGTAGACTGTTAAAAGGTAGTCAT
EST: gi|208037513|gb|GD832670.1|GD832670
EST:     TTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTATTCAAG                         GTATTAGCTGACAACATTAATATGCCTTGTAGACTGTTGAAAGGTAGTCAT
genomic: TTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTATTCAAGgttagtatta ... ctgcattcagGTATTAGCTGACAACATTAATATGCCTTGTAGACTGTTAAAAGGTAGTCAT