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...tatatttagattcacatatgtgctagtttctacttttcttgtaacaatatatagctgtgtctatcgaatgcatctctattaatcatcatttcaaatacagATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGAGTGAAATGAATACTATGCAAGTTGTTGGTGCCGTTGGT
species | Glycine max |
transcript | GLYMA20G37330.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA ATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGEST: gi|151403479|gb|EV273289.1|EV273289
genomic: CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAgtgagttgtt ... tcaaatacagATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAG
EST: AAGTTCTCCGCAATGAACCCTCAAATGAGAA ATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGEST: gi|209714333|gb|BW677046.1|BW677046
genomic: AAGTTCTCCGCAATGAACCCTCAAATGAGAAgtgagttgtt ... tcaaatacagATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAG
EST: AATGAACCCTCAAATGAGAA ATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGEST: gi|16343145|gb|BI968740.1|BI968740
genomic: AATGAACCCTCAAATGAGAAgtgagttgtt ... tcaaatacagATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAG
EST: CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAA ATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAG
genomic: CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAgtgagttgtt ... tcaaatacagATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAG
aatatatagctgtgtctatcgaatgcatctctattaatcatcatttcaaatacagATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGAGTGAAATGAATACTATGCAAGTTGTTGGTGCCGTTGGT
tattaat putative branch site (score: 2)
tcatttc putative PPT
tattaatcatcatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatttagattcacatatgtgctagtttctacttttcttgtaacaatatatagctgtgtctatcgaatgcatctctattaatcatcatttcaaatacagATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGAGTGAAATGAATACTATGCAAGTTGTTGGTGCCGTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG