1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgaaacatgctaagatttatggaaattacataatgtttcgtctactagctactaatataagggattctgttttgatcaacaaggttttatgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAGGTTTGCTG
species | Glycine max |
transcript | GLYMA20G37280.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|21994040|gb|BQ785568.1|BQ785568
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGTTTGTTTATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|254340199|gb|GR858324.1|GR858324
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|254338389|gb|GR845639.1|GR845639
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|151409405|gb|EV279213.1|EV279213
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|151401688|gb|EV271501.1|EV271501
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|5820065|gb|AI988271.1|AI988271
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|254338247|gb|GR849772.1|GR849772
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|58019268|gb|CX706010.1|CX706010
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|58019608|gb|CX706350.1|CX706350
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|58024841|gb|CX711582.1|CX711582
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|254348058|gb|GR854307.1|GR854307
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|254338246|gb|GR849771.1|GR849771
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|308098448|gb|HO760189.1|HO760189
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|254338390|gb|GR845640.1|GR845640
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAEST: gi|15001006|gb|BI321820.1|BI321820
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAACTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
ctagctactaatataagggattctgttttgatcaacaaggttttatgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAGGTTTGCTG
tactaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaaacatgctaagatttatggaaattacataatgtttcgtctactagctactaatataagggattctgttttgatcaacaaggttttatgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAAGGTTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - gctacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaca